# 06 - 498 The Role of Circadian Biology in Health and Disease

## 498 The Role of Circadian Biology in Health and Disease

Millán-Zambrano G et al: Histone post-translational modifica­
tions—cause and consequence of genome function. Nat Rev Genet 
23:563, 2022.
Sendinc E, Shi Y: RNA m6A methylation across the transcriptome. 
Mol Cell 83:428, 2023.
Vandereyken K et al: Methods and applications for single-cell and 
spatial multi-omics. Nat Rev Genet 24:494, 2023.
Zhang W et al: The ageing epigenome and its rejuvenation. Nat Rev 
Mol Cell Biol 21:137, 2020.

The Role of Circadian 

Biology in Health 

and Disease
Jonathan Cedernaes, Kathryn Moynihan Ramsey, 
Joseph Bass
Circadian rhythms are anticipatory, circa 24-h, autonomous cycles 
of physiology and behavior. These evolutionarily conserved rhythms 
have evolved at both the cell and tissue level to synchronize organismal 
function in anticipation of the 24-h rotation of the Earth. A common 
feature of modern “24/7” life is the routine disruption of these endog­
enous circadian cycles due to the rise in shift work, jet travel across 
time zones, exposure to blue light–emitting devices at night, and dis­
rupted sleep-wake behavior. In-depth characterization of the molecular 
basis of circadian disorders has generated novel avenues for research on 
how sleep-wake disruption has been associated with aging, metabolic 
disease, inflammation, and cancer. This chapter provides an overview 
of (1) the basic biology of the circadian system; (2) primary circadian 
rhythm and interrelated sleep disorders; and (3) the role of the circa­
dian system in both normal human physiology and disease states. We 
also include an overview of how the emerging field of chronobiology 
may impact drug action. A glossary of terms used in circadian biology 
is summarized in Table 498-1.
■
■BASIC EVOLUTION AND STRUCTURE 

OF THE CIRCADIAN SYSTEM
Long before the emergence of multicellular life, the Earth’s constant 
rotation around its axis gave rise to a daily cycle of light and darkness. 
At the emergence of the first prototypal gene involved in biological 
clock regulation—3.4 billion years ago in photosynthetic cyanobacteria—
the period of Earth’s rotation along its own axis was only 8 h. The 
co-occurrence in molecular evolution of the biological clock and 
photosynthesis hints at an interrelated and selective advantage of the 
clock in the regulation of energetic processes. Indeed, biological clocks 
coordinate oxygenic reactions with periods of sunlight each day, and 
perturbation of clock cycles reduces fitness, reproduction, and survival. 
Additionally, clocks protect photosynthetic organisms from the DNAdamaging effects of sunlight by timing the production of DNA repair 
processes, such as photolyase-mediated repair, to the nighttime. Across 
billions of years of evolution, as day length has gradually extended 
to today’s circa 24 h, highly conserved circadian clocks (from circa 
diem, meaning “about a day”) have been found in all photosensitive 
organisms, governing a wide range of biochemical, physiologic, and 
behavioral processes. A defining property of the circadian clock system 
is that it enables organisms to anticipate, rather than simply react to, 
daily changes in the external environment that are tied to the day-night 
cycle. In mammals, circadian systems are organized hierarchically with 
a light-responsive “master” circadian pacemaker located within the 
suprachiasmatic nucleus (SCN) of the anterior hypothalamus, which in 

turn presides over a network of both extra-SCN and peripheral clocks 
(see “Anatomic Organization of the Circadian Clock Network” below). 
Daily light exposure signals to the SCN and entrains the circadian 
system to the 24-h day (see “Entrainment and Measurement of the 
Circadian System,” below). In turn, the SCN maintains synchrony of a 
diverse network of both central and peripheral clocks via a variety of 
signals that have as of yet to be fully identified. These signals involve 
direct physiologic rhythms (core body temperature), the autonomic 
nervous system, and neuroendocrine signals, such as cortisol, which is 
part of the hypothalamic-pituitary-adrenal (HPA) axis.

■
■MOLECULAR ORGANIZATION OF THE 
MAMMALIAN CIRCADIAN CLOCK
At the molecular level, mammalian circadian rhythms are generated by 
a transcription-translation autoregulatory feedback loop. The forward 
limb of the clock is composed of the basic helix-loop-helix transcrip­
tion factors (TFs) CLOCK (or its paralogue, NPAS2) and BMAL1. 
These drive expression of their own repressors (PERs and CRYs) in the 
negative limb in a cycle that repeats itself every 24 h (Fig. 498-1). A 
second short feedback loop involves CLOCK/BMAL1-mediated tran­
scription of the retinoic acid–related orphan nuclear receptor families 
ROR and REV-ERB, which activate and repress Bmal1 transcription, 
respectively. Rhythmic posttranslational regulation of the stability 
and degradation of core clock TFs occurs via events such as phos­
phorylation by casein kinase 1 epsilon (CK1ε) and casein kinase 1 delta 
(CK1δ) and ubiquitination by FBXL3 and FBXL21. In addition to the 
circa 24-h oscillation of core clock genes, a wide array of downstream 
clock-controlled genes (CCGs) exhibit broad rhythmic amplitude in 
expression, ultimately giving rise to rhythmic physiologic processes.
CHAPTER 498
The importance of localized clock gene expression has been dem­
onstrated by genetic animal studies, such as with targeted ablation 
of Bmal1, the only clock gene that lacks a known functional paralog. 
Deletion of Bmal1 either in the whole brain or in regions that span the 
brain region that coordinates circadian rhythms—the SCN—causes 
behavioral arrhythmicity, even when genetic ablation occurs in adult 
life. Conversely, restoring Bmal1 expression specifically in brain 
in global adult Bmal1 mutant mice rescues behavioral locomotor 
rhythms. Of note, whereas the protein CLOCK normally heterodimer­
izes with BMAL1, the paralogous protein NPAS2 can functionally 
substitute for CLOCK within the pacemaker neurons. Thus, while mice 
lacking either Clock or Npas2 genes maintain rhythmicity, mutants 
lacking both CLOCK and NPAS2 lack circadian rhythms in locomotor 
activity. Further, mutations in many of the clock genes are associated 
with impaired circadian rhythms and physiology in both experimental 
animal models and humans (see “Primary Pathologies of the Circadian 
System” below).
The Role of Circadian Biology in Health and Disease  
A major transformation in our understanding of circadian biology 
came with the discovery that the molecular clock network is present 
not only in the SCN but also within most peripheral tissues, as well as 
in extra-SCN neurons in the brain. In primates, ~82% of all proteincoding transcripts exhibit daily 24-h rhythms in some tissue or other. 
In rodents studied under constant conditions, ~3–16% of the transcrip­
tome in each tissue exhibits 24-h rhythms in mRNA expression levels, 
even though the repertoire of such genes varies substantially between 
tissues, in accordance with tissue-specific functions. The core clock 
feedback loop and the induction of transcriptional CCG rhythms also 
involves epigenetic mechanisms such as conformational chromatin 
dynamics, histone acetylation, and DNA methylation. Conversely, 
posttranscriptional events such as RNA polyadenylation, nucleocy­
toplasmic shuttling, alternative splicing, and mRNA translation also 
exhibit circadian variation, further increasing the repertoire of rhyth­
mic regulation at a cellular level.
■
■ANATOMIC ORGANIZATION OF THE 

CIRCADIAN CLOCK NETWORK
The molecular circadian feedback loop is synchronized with sunrise 
each day by photosensitive melanopsin-expressing neurons within 
the retina. These neurons provide input to the SCN via the retino­
hypothalamic tract (RHT), allowing mammals to maintain coherent

TABLE 498-1  Glossary of Terms Used in Discussion of the Circadian System
TERM
DESCRIPTION
ASPD
Advanced sleep phase disorder (see text for description).
CBT
Core body temperature. Often used as an indicator of the circadian rhythm but can be masked by sleep and exercise.
CCGs
Clock-controlled genes; output of the molecular clock.
Chronotype
Internal circadian rhythm of an individual determined by phase of entrainment, determining sleep propensity and timing of maximum 
alertness over a 24-h period.
Circadian period
Time required for one complete cycle or oscillation. Calculated by the time distance between two consecutive peaks or troughs of a 
circadian variable.
Circadian phase
Timing of the circadian rhythm. Defined by comparing, e.g., the peak (acrophase) or trough (bathyphase) to a fixed event, e.g., to a point 
in time. Synonymous with phase angle.
Circadian rhythm
A biological process that exhibits an endogenous, entrainable oscillation of ~24 h.
Circadian rhythm sleep 
disorders
Disorders of multiple etiology that have in common that they result in maladjustment of the biological clock with respect to the 
environment.
Constant routine
An experimental paradigm designed to study endogenous circadian rhythms in humans, by keeping behavioral and environmental 
factors constant. These paradigms thereby typically entail a combination of constant dim lighting, evenly distributed isocaloric energy 
intake, semirecumbent posture, and forced extended wakefulness.
Desynchrony
Loss of synchrony occurring either between a rhythm and its zeitgeber (external, “time giver” signal) or between two or more rhythms 
within an organism (internal).
Diurnal rhythm
An oscillation synchronized with the day/night cycle that repeats itself with a 24-h period. The rhythm does not have to persist when time 
cues (e.g., light) are absent.
DLMO
Dim-light melatonin onset; a marker of melatonin rhythm.
DSPD
Delayed sleep phase disorder (see text for description).
Entrainment
Synchronization of a circadian rhythm or other self-sustaining oscillation by a factor—zeitgeber—that enforces the oscillator. Constant 
entrainment between the zeitgeber and the oscillator results in a stable phase relationship between these entities.
Infradian rhythm
A recurrent cycle or period with a period length significantly greater than 24 h.
Melatonin
Hormone produced primarily by the pineal gland (chemical name N-acetyl-5-methoxytryptamine); derived from L-tryptophan. Various 
forms of melatonin can be prescribed for circadian rhythm sleep disorders or sleep disorders.
PART 20
Emerging Topics in Clinical Medicine
Non-24-h rhythm disorder
A syndrome in which there typically are chronic 1- to 2-h daily delays in sleep onset and wake times in an individual living in society, e.g., 
due to complete blindness.
Peripheral clocks
Clocks presiding outside of the suprachiasmatic nucleus, the circadian system’s master pacemaker.
PRC
Phase response curve; visual representation of how a particular manipulation (e.g., light) produces phase shifts as a function of the 
phase (i.e., circadian time) at which the manipulation occurs. Defining the PRC to light has enabled researchers to understand and 
predict how entrainment to light cycles is accomplished.
SCN
The suprachiasmatic nucleus or nuclei, also known as the master pacemaker in mammalian species. A bilateral set of nuclei positioned 
in the anterior ventral hypothalamus. Essential for entraining extra-SCN central and peripheral oscillators to the prevailing light-dark 
cycle via photic input from the retina.
Shift work
Work scheduled so that it occurs outside of the traditional work schedule of 9:00 a.m. to 5:00 p.m., or 7:00 a.m. to 6:00 p.m., depending on 
definition. Various forms of shift work exist, such as early morning, evening, or night shifts, as well as rotating shifts.
Ultradian rhythm
A recurrent cycle or period with a period significantly shorter than 24 h—e.g., a 2-h rhythm would exhibit 12 cycles within a circadian 
(24-h) rhythm.
RRE
Bmal1
CK1ε/δ
PERs
P
CRYs
P
CLOCK
BMAL1
E-box
RORα/γ
FIGURE 498-1  Central clock molecular mechanism. The core molecular clock machinery in mammals is encoded by interlocking transcription-translation feedback loops 
that oscillate with ~24-h periodicity. The transcription factors CLOCK and BMAL1 heterodimerize to drive transcription of downstream clock-controlled target genes 
containing E-box enhancer elements. Among these, the PER and CRY proteins multimerize and inhibit CLOCK/BMAL1, while RORs and REV-ERBs activate and inhibit, 
respectively, Bmal1 transcription, resulting in rhythmic oscillations of clock-controlled and downstream target genes.

Stabilization
FBXL21
CRYs
CRYs
P
FBXL3
Degradation
Clock-controlled genes
Rev-erbα/β

Environmental inputs and 
internal circadian organization
Brain Clocks
SCN
Environmental
light/dark
cycle
SCN
Extra-SCN
LHA
PVN
ARC
PIT
Non-autonomous
circadian control
Peripheral Clocks
Vasculature
Liver
Adrenals
Pancreas
Muscle
Environmental
nutrient cycle
fasting/feeding
Fibroblasts
Intestine
Hematopoetic
Adipose
Autonomous
circadian control
FIGURE 498-2  Central and peripheral clocks coordinate environmental cues with behavior and physiologic outputs. Light entrains the master pacemaker neurons in 
the suprachiasmatic nucleus (SCN), which subsequently synchronizes extra-SCN and peripheral clocks. Brain clock output includes sleep-wake, fasting-feeding, and 
energy expenditure cycles, while peripheral clock output includes a wide range of physiologic processes, including glucose homeostasis, oxidative metabolism, cytokine 
production, and stress response. The right column indicates different ways that circadian disruptors, such as diet, shift work, or other circadian rhythm sleep disorders, may 
impact the clock—i.e., by changing circadian period, phase, or amplitude.
organismal rhythms in line with the external light/dark cycle. Under­
standing the circuit organization of the circadian clock within the brain 
is increasingly relevant in understanding how the master circadian 
pacemaker center within the SCN regulates feeding, sleep-wake activ­
ity, endocrine processes, energy expenditure, and metabolism (Fig. 
498-2). Identification of the SCN as the master pacemaker was first 
established by the observation that SCN lesioning induced complete 
loss of rhythms of locomotor activity, drinking behavior, and endo­
crine hormone secretion. The ventral “core” region of the SCN, which 
is composed of neurons producing vasoactive intestinal polypeptide 
(VIP), receives photic information directly from the retina through the 
RHT. At the molecular level, circadian gene transcription is induced 
within the SCN through the initial activation of immediate early genes, 
such as Per1, Per2, c-fos, and jun. Cells within the “core” region of the 
SCN then signal primarily via γ-aminobutyric acid (GABA)-ergic neu­
rotransmitter release to synchronize the cells within the “shell” region 
of the SCN, which produce arginine vasopressin (AVP), the most 
important neuropeptide for maintaining intra-SCN synchronicity.
The SCN communicates to extra-SCN and peripheral clocks 
through both secreted factors and neuronal projections. The former 
was elegantly proven by the ability of SCN grafts to partially restore 
locomotor rhythms in SCN-lesioned animals. Efferent nerve outputs 
arise both from the AVP-producing shell region of the SCN and the 
VIP-predominated core. The SCN projects to several hypothalamic 
and thalamic regions, including the median preoptic nucleus (MPO), 
the subparaventricular zone (SPZ), the dorsomedial hypothalamus 
(DMH), the paraventricular nucleus of the hypothalamus (PVH), and 
the paraventricular nucleus of the thalamus (PVT). Some of these 

Behavioral and 
physiologic outputs
Circadian
disruptors
Sleep/wake
Feeding/fasting
Energy expenditure
Glucose homeostasis
∆ Period 
(High fat)
Original phase
New phase
period
amplitude
Environmental
light cycle
Internal
circadian time
phase
∆ Phase 
(Shift work)
∆ Amplitude 
(Night eating, insulin resistance)
Glucose homeostasis
Lipogenesis
Oxidative metabolism
Mitochondrial respiration
Xenobiotic detoxifixation
Cytokine production
Vascular tone
Hemostasis
Stress response
Thermogenesis
Incretin production
DNA damage/repair
CHAPTER 498
The Role of Circadian Biology in Health and Disease  
regions, in turn, regulate output to both sleep- and wake-promoting 
regions, as well as to regions involved in regulation of autonomic, body 
temperature, and hormonal rhythms, as well as feeding. The SCN is 
thereby thought to promote sleep in part through the transmission 
of neural signals that terminate in the sleep-promoting ventrolateral 
preoptic nucleus (VLPO), i.e., one of the brain regions that is active 
during sleep. In contrast, the SCN promotes wakefulness during the 
active phase by transmission of neural signals that—by passing through 
regions such as the SPZ and the DMH—terminate in wake-promoting 
regions, including the locus coeruleus, lateral hypothalamic nucleus, 
ventral tegmental area, and dorsal raphe nucleus.
The SCN also signals via noradrenergic fibers to the pineal gland to 
regulate the circadian production of the hormone melatonin. SCN con­
trol of the nighttime rise in pineal melatonin release (in both diurnal 
and nocturnal animals) is mediated through a pathway involving the 
PVH. Of note, artificial light at night delays the secretion of melatonin, 
ultimately affecting sleep (see “Endocrine Systems Regulated by the 
Circadian Clock” below). Melatonin plays a complex role in the circa­
dian system since the MT1 and MT2 melatonin receptors are expressed 
in the SCN itself; thus, melatonin feeds back to modulate circadian 
outputs to other cells in the brain and body.
Neuronal output from the SCN also reaches peripheral tissues such 
as the adrenal glands, liver, and pancreas. The SCN produces rhythmic 
variation in multiple neuroendocrine axes, producing daily rhythms 
of gonadotropin, thyrotropin, and somatotropin. Prominent HPA axis 
rhythms ultimately give rise to daily variation in diverse pathways 
essential for hemodynamic stability, metabolism, and inflammation. 
These rhythms originate with SCN control of corticotropin-releasing

hormone (CRH)–producing cells in the PVH, which may regulate 
sleep as well as induce daily oscillations of both pituitary adrenocor­
ticotropic hormone (ACTH) and adrenal cortisol. Highlighting the 
importance of SCN output for peripheral rhythms, there is a dramatic 
reduction in the number of transcripts that exhibit circadian rhythms 
in the liver following SCN ablation in mice. Nonetheless, when the 
autonomous clock in the liver is ablated in mice, some key clock 
transcripts such as Per2 still cycle provided the core body temperature 
rhythm persists. Whereas the SCN is exclusively entrained by light, 
meal timing can signal circadian time directly to peripheral tissues 
such as the liver. Thus, shifted meal timing as occurs during shift work 
or jetlag can uncouple peripheral clocks from the central pacemaker. 
Temperature can also phase shift peripheral tissue clocks, but not the 
SCN clock. This is an important phenomenon because, at the organis­
mal level, the SCN generates the core body temperature rhythm as one 
of the major mechanisms to signal circadian time to peripheral clocks.

■
■ENTRAINMENT AND MEASUREMENT 

OF THE CIRCADIAN SYSTEM
Under normal light-dark cycles, the circadian system is corrected or 
“entrained” on a daily basis, producing diurnal rhythms of 24 h. Such 
signals of entrainment are called zeitgebers (German for “time-giver” 
signals) and include light exposure, meal timing, and activity patterns. 
Light serves as the dominant zeitgeber for the circadian system, and a 
breakthrough in understanding photoentrainment in mammals came 
with the discovery of the melanopsin system, which is composed of a 
specialized class of photosensitive retinal ganglion cells that expresses 
the blue light–sensitive photopigment melanopsin in the inner retina, 
separate from the photoreceptive rods and cones. Blue light around 
this wavelength (~480 nm) suppresses melatonin, such that melatonin 
levels are normally low during the day, promoting subjective and objec­
tive (electroencephalography assessed) wakefulness.
PART 20
Emerging Topics in Clinical Medicine
The ability of light to entrain the circadian system functions accord­
ing to a so-called phase response curve (PRC). When light exposure 
occurs prior to the critical phase of the core body temperature (CBT), 
defined by the CBT’s minimum, light produces a phase delay in the 
circadian rhythm. Conversely, light exposure after this critical period 
causes phase advances. The circadian system can respond even to 
small changes in light intensity (e.g., dim light at ~100 lux can produce 
half of the phase delay compared with an almost 100-fold greater light 
exposure). This responsiveness has been found to be highly individual 
and varies widely. This is in part due to genetic variation, as variants in 
clock genes can modulate the responsiveness of the human circadian 
system to light.
When an organism is placed in an environment without zeitgebers, 
the circadian rhythm is said to free-run, as it relies on the endogenous 
rhythm of the circadian system. In humans, the study of endogenous 
circadian rhythms can be achieved by using a so-called constant rou­
tine that eliminates the risk of masking by factors such as sleep. In 
these paradigms, subjects are kept awake in a constant semi-recumbent 
posture, meals are provided on an hourly basis, and light is constantly 
kept below the level that can phase shift the SCN. Concurrently, circa­
dian rhythms are assessed by frequently measuring CBT, melatonin, or 
peptidergic hormone rhythms over the course of more than 24 h. In ani­
mals, endogenous circadian rhythms are instead studied by examining 
behavior, physiologic responses, and voluntary locomotor activity fol­
lowing 30–36 h of complete darkness. From these measurements, key 
properties of the circadian system can be ascertained, such as period 
length (peak-to-peak or trough-to-trough time), amplitude (peak-totrough difference), and phase (timing of peak or trough in relation to a 
reference point) (Fig. 498-2).
These studies have revealed that the endogenous human circadian 
clock runs with a period length of ~24.2 h, while that of mice runs 
at ~23.5 h, with some variability across strains. In humans, evidence 
further indicates that females may have a slightly shorter circadian 
clock than males (24.1 vs 24.2 h), and many circadian parameters have 
been found to exhibit differences that are dependent on biological sex. 
Notably, interindividual variability in the endogenous circadian period 
length is further diversified by the existence of genetic polymorphisms in 

clock genes (see below). These gene variants can confer extremes in the 
endogenous circadian period as well as phase; the latter can be advanced 
or delayed by ~3–4 h in each direction. This is due both to altered cir­
cadian rhythms at the cellular level and to altered SCN responsiveness 
to entrainment by light. For instance, PER3 gene contains a variablenumber, tandem-repeat polymorphism. Individuals homozygous for a 
PER3 5/5 genotype have been reported to be more responsive than PER3 
4/4 homozygous individuals to the melatonin-suppressing effect of eve­
ning blue light exposure. By analyzing genetic variation across ~700,000 
individuals, the number of genetic loci that have been identified that 
contribute to variability in chronotype is in the hundreds.
Using specifically developed questionnaires to establish preferred 
sleep-wake timing, individuals can be categorized into so-called 
morningness-eveningness types or chronotypes. The most commonly 
used questionnaires are the Horne-Östberg Morningness-Eveningness 
Questionnaire (MEQ) and the Munich ChronoType Questionnaire 
(MCTQ). A composite MEQ score allows grouping into five categories 
that range from definite morning-type to evening-type individuals 
based on preferred waking time. In contrast, the MCTQ centers on 
the midpoint of sleep as a circadian marker, queries age and sex across 
a range of geographical locations, and can be used to ascertain differ­
ences between socially imposed sleep patterns (e.g., on working days) 
and sleep patterns on free days (the difference constituting so-called 
social jetlag). According to MCTQs obtained from primarily European 
populations, ~1% of the general population goes to bed before 10:00 
p.m. and ~8% after 3:00 a.m. Differences in chronotype are linked to 
altered circadian timing, including peak levels of melatonin, which 
can vary by up to 4 h between extreme morning and evening types. 
Extreme chronotypes have also been shown to be linked to various 
traits; i.e., low morningness scores have been associated with greater 
tolerance to night shift work.
Melatonin is one of the most commonly used peripheral markers of 
an individual’s circadian rhythm, reflecting the rhythmic function of 
the SCN. Circadian rhythms of melatonin can be measured in saliva 
or plasma, whereas 6-sulphatoxymelatonin (aMT6S), a metabolite 
generated from the breakdown of melatonin, can also be measured in 
urine. Accurate estimations of melatonin rhythms are often obtained 
by analyzing the dim light melatonin onset (DLMO). As the name 
implies, this involves evening/nighttime sampling of melatonin as 
opposed to 24-h sampling. This makes DLMO quantification useful 
in both the clinical and research settings. In normally entrained indi­
viduals, the DLMO can be used to ascertain whether an individual’s 
circadian rhythm is phase advanced or delayed, and this onset typically 
occurs ~2 h before the onset of sleep. The midpoint of sleep—the main 
marker used by the MCTQ—correlates more strongly with melatonin 
onset than the MEQ score. In the morning hours, the offset of mela­
tonin (“DLMoff”) can be used as a marker of circadian alignment or 
misalignment with the light-dark cycle. When individuals are exposed 
only to the natural light-dark cycle dictated by the sun, such as in 
an outdoor natural lighting environment, DLMO and DLMoff occur 
earlier. In contrast, exposure to artificial light has the overall effect of 
delaying the biological night and contributes to widening differences 
between chronotypes in modern society.
The CBT is also often utilized as an indicator of the circadian 
rhythm. Even though CBT is more variable than DLMO, it usually 
correlates well with the phase obtained using the melatonin rhythm. 
The CBT, however, can be masked by factors such as sleep, food intake, 
and activity. CBT can be recorded and registered wirelessly with rela­
tive ease. In humans, CBT can be recorded via rectal thermometers or 
probes that are swallowed to pass through the gastrointestinal tract. 
When humans are studied under normal conditions with normal light­
ing and sleep duration from 2300 to 0700 h, the CBT reaches around 
37.2°C by 0900 h, and from there, it continues to rise slowly until it 
reaches 37.4°C around 11 h later. The CBT then drops to the daily low 
of 36.5°C in the early morning (0400 h). The minimum in body tem­
perature also corresponds to the trough in the 24-h rhythm in resting 
energy expenditure.
Given the interrelationship between the circadian system and sleepwake systems, researchers have developed paradigms that uncouple

the circadian system from sleep-wake states, enabling the study of the 
contribution of the circadian system to investigated parameters across 
the entire sleep-wake cycle. These paradigms are known as “forced 
desynchrony” protocols and involve enforcing a significantly shortened 
(e.g., 20 h) or prolonged (e.g., 28 h) day length upon individuals. These 
protocols thus attempt to approximate what occurs during rotating 
shift work or “jetlag,” e.g., when travel across several time zones sud­
denly shifts the light-dark and behavioral cycles drastically away from 
the entrained 24-h rhythm. As described below, forced desynchrony 
protocols have contributed to uncovering how the circadian system 
regulates parameters such as cognitive performance, subjective alert­
ness, and metabolic and cardiovascular health.
■
■PRIMARY PATHOLOGIES OF THE 

CIRCADIAN SYSTEM
An overarching term for disorders of the circadian system is circadian 
rhythm sleep disorders (CRSDs), where there is a mismatch between 
subjective behavioral and physiologic rhythms with the environmental 
light-dark or social activity-rest cycles (i.e., the body clock is out of 
sync with the external light-dark cycle). CRSDs can arise either due to 
misalignment of an exogenous environmental factor, such as light, or 
misalignment of the activity-rest cycle, such as occurs with shift work 
or jetlag, in relation to endogenous circadian timing. Mutations in the 
core clock genes themselves can also alter intrinsic circadian timing in 
relation to the external environment, which makes it difficult for these 
individuals to properly realign themselves. These disorders often result 
in adverse effects such as excessive sleepiness or depressed mood, often 
causing individuals to be unable to maintain a job or attend school at 
regular hours. The criteria for CRSDs based on the International Clas­
sification of Sleep Disorders (ICSD) are shown in Table 498-2.
Animal models have greatly advanced our understanding of how 
core molecular clock components contribute to maintaining normal 
sleep-wake/rest-activity cycles (Table 498-3). For example, Clock∆19/∆19 
mice have reduced total sleep duration and less induction of rapid 
eye movement (REM) sleep in response to sleep deprivation. Further, 
TABLE 498-3  Animal Models of Genetic Circadian Disruption
 
AVERAGE CIRCADIAN TIME OF PEAK TRANSCRIPT LEVEL
 
GENE
MUTANT PHENOTYPE
SCN
PERIPHERY
Bmal1 (Arntl)
15–21
22–2
Bmal1−/−
Arrhythmic
CK1δ (Csnk1δ)
No rhythm
No rhythm
Csnk1δ+/–
0 to 0.5-h shorter period
CK1ε (Csnk1ε)
No rhythm
No rhythm
CK1εtau
4-h shorter period
CK1ε
—
—
CK1ε−/−
0.2- to 0.4-h longer period
Clock
No rhythm
21–3
Clock−/−
0.5-h shorter period
—
—
—
ClockD19/D19
4-h longer period/arrhythmic
Clock/Npas2
—
—
Clock−/−/NPAS2−/−
Arrhythmic
Cry1
8–14
14–18
Cry1−/−
1-h shorter period
Cry2
8–14
8–12
Cry2−/−
1-h longer period
—
—
—
Cry2A260T
0.2-h shorter period
Dbp
—
—
Dbp−/−
0.5-h shorter period
Npas2
N/A
0–4
Npas2−/−
0.2-h shorter period
Per1
4–8
10–16
Per1−/−
0.7-h shorter period
—
—
—
Per1brdm1
1-h shorter period
—
—
—
Per1ldc
0.5-h shorter period/arrhythmic
Per2
6–12
14–18
Per2brdm1
1.5-h shorter period/arrhythmic
—
—
—
Per2ldc
Arrhythmic
Per3
4–9
10–14
Per3−/−
0 to 0.5-h shorter period
Rev-erbα (Nr1d1)
2–6
4–10
Rev-erbα−/−
0.5-h shorter period/disrupted photic entrainment
Rorα
6–10
Arrhythmic/various
staggerer
0.5-h shorter period/disrupted photic entrainment
Rorβ
4–8
18–22
Rorβ−/−
0.5-h longer period
Rorγ
N/A
16–20/various
Rorγ−/−
Normal behavior
Note: Normal circadian rhythms of circadian clock and related genes, with description of circadian phenotype in mutant mice.
Abbreviation: N/A, not applicable.
Source: Adapted from Hum Mol Genet 15:R271, 2006, and Adv Genet 74:175, 2011.

TABLE 498-2  Criteria for Circadian Rhythm Sleep Disorders
CRITERIA
DESCRIPTION
A
A persistent or recurrent pattern of sleep disturbance due 
primarily to one of the following:
• Alterations of the internal circadian timekeeping system.
• Misalignment between endogenous circadian rhythms and 
exogenous factors that affect the timing or duration of sleep.
B
A circadian-related sleep disruption that leads to insomnia, 
excessive daytime sleepiness, or both.
C
A sleep disturbance that is associated with impairment of social, 
occupational, or other areas of functioning.
mice that lack Bmal1 have increased total sleep time, but it is more 
fragmented and lacks clear 24-h sleep-wake rhythms, and mice lacking 
the repressors Cry1 and Cry2 are arrhythmic and spend more time in 
non-REM sleep. Finally, while ablation of the circadian gene Dbp does 
not alter the specific duration of sleep stages, it does lead to an altered 
circadian sleep-wake distribution, with more sleep during the normal 
wake period and vice versa. Consistent with a key role of clock genes 
in regulating sleep-wake behavior, human genetic studies of twins have 
found that up to half of the variation in diurnal preference is heritable. 
Established genetic variants associated with diurnal preference and cir­
cadian sleep disorders are listed in Table 498-4. The following briefly 
mentions the most common CRSDs, but readers should refer to the 
chapter on sleep disorders (Chap. 33) for a more detailed description.
Delayed Sleep Phase Disorder 
Delayed sleep phase disorder 
(DSPD; or delayed sleep-wake phase disorder [DSWPD]) is one of 
the more common circadian rhythm sleep disorders, ranging from 
0.2–16% of the population depending on definition used, and is most 
common in adolescence and early adulthood. DSPD is characterized 
by chronic and significant delays in both sleep onset and wake times 
compared to “socially acceptable” sleep-wake hours (i.e., “extreme 
night owls”). Rhythms of CBT and melatonin levels are also often 
CHAPTER 498
The Role of Circadian Biology in Health and Disease  
 
ALLELE

TABLE 498-4  Mutations and Gene Variants Linked to Sleep-Wake Disorders and Diurnal Preference
GENE
POSITION
POPULATION
SYNDROME/SLEEP PREFERENCE
hCKIε
S408N
Japanese
Protection against DSPS
hCKIγ
T44A
Pedigree
FASPS
hCKIΔ
H46R
Pedigree
FASPS
hCLOCK
T3111C (3′-UTR)
European
Eveningness
hCRY2
A260T
Pedigree
FASPS
hPER2
S662G (missense mutations in CKIε binding region)
Pedigree
FASPS
hPER2
C111G (5′-UTR)
British
Extreme morningness
hPER3
P415A/H417R
Pedigree
FASPS and seasonal affective disorder
hPER3
G647
Swedish/Finish/Austrian/German
Morningness
hPER3
G647, P864, 4-repeat, T1037, R1158
Japanese
DSPS
hPER3
Increased repeats (exon 18, 54 bp)
Brazilian
DSPS
hVIP
rs9479402 (gene variant 54 kb upstream of VIP)
European (>97% European ancestry)
Morningness
Abbreviations: DSPS, delayed sleep phase syndrome; FASPS, familial advanced sleep phase syndrome.
delayed. DSPD is associated with polymorphisms within the circadian 
clock genes CLOCK, PER3, and CRY1, and the circadian period (tau) of 
these individuals may be longer. The most effective treatment includes 
bright-light therapy after waking in the morning (and/or dark-room 
therapy in the evening) in combination with melatonin administra­
tion in the evening several hours prior to the onset of sleep. These 
approaches attempt to realign endogenous circadian rhythms with 
the desired sleep-wake schedule, though often face challenges because 
individuals suffering from DSPD also phase delay more rapidly.
PART 20
Emerging Topics in Clinical Medicine
Advanced Sleep Phase Disorder 
Another CRSD whereby one 
gets the correct amount and quality of sleep but at a shifted time is 
advanced sleep phase disorder (ASPD; or advanced sleep-wake phase 
disorder [ASWPD]). The prevalence of this disorder may be <1%, but 
the condition may be underreported, given that it may cause fewer 
conflicts with societal demands (i.e., 9-to-5 schedules) compared with 
DSPD. Individuals with ASPD experience an advance in their major 
sleep episode in relation to the desired sleep-wake times. Thus, this 
disorder typically results both in very early evening bedtimes and 
morning awakenings (e.g., “extreme early birds”), resulting in reduced 
quality of life due to excessive sleepiness during the early evening, even 
in social situations. Individuals with ASPD also have phase-advanced 
temperature and melatonin rhythms. ASPD occurs more often in 
older individuals, although early-onset autosomal dominant familial 
variants (familial advanced sleep phase syndrome [FASPS]) have also 
been associated with mutations in either the PER2 or the casein kinase 
1δ (CK1δ) gene. PER2 is critical for SCN resetting by light, and these 
PER2 mutations have been found to shorten the endogenous circadian 
period to ~23.3 h compared with the normal 24.2-h period length. 
Treatment includes bright light or blue-enriched phototherapy in the 
evening hours to delay the phase of the circadian clock to a later hour.
Shift Work Sleep Disorder 
Given the increased prevalence of 
shift work in today’s 24/7 society and the accumulating evidence for 
increased incidence of sleep and metabolic disorders, including obesity, 
type 2 diabetes, cardiovascular disease, and cancer, in shift workers, 
the need to develop effective treatments for shift work sleep disorder 
(SWSD) is increasingly important. SWSD is at its core defined by the 
primary symptom of either insomnia or excessive sleepiness arising 
due to work scheduled during regular sleeping hours or at irregular 
times. The symptoms may arise because recovery sleep consumes a 
large proportion of the individual’s free time, potentially leading to 
negative social consequences such as difficulties maintaining social 
relationships. Older individuals are typically at an increased risk of 
SWSD due to the age-associated decline in the ability to maintain sleep 
during the time of day that would normally constitute the wake period. 
Therapeutic approaches include optimizing the sleep environment at 
home to minimize disruptions, melatonin prior to sleeping, and timed 
bright-light therapy. For example, for night workers, intermittent 
bright-light exposure during the night and avoidance of bright light 

during the morning, even on days off, have been shown to improve 
sleep and feelings of alertness. Genetic screening combined with 
chronotype questionnaires may become useful tools for determining 
whether a given individual is suited for shiftwork. For instance, a twin 
study indicated that a genetic variant of the circadian gene DEC2 was 
associated with reduced sleep duration and shorter recovery sleep fol­
lowing extended sleep deprivation. More studies may reveal additional 
genetic variants that confer an advantage to repeated phase advances 
and phase delays as typically occurs in shift work.
Irregular Sleep-Wake Rhythm 
Damage to the SCN can produce 
arrhythmicity in animals and is thought to be one of the possible 
underlying reasons for the temporally disorganized sleep-wake pattern 
that characterizes the disorder known as irregular sleep-wake rhythm 
(ISWR). Other contributing factors may be reduced responsiveness 
to entraining signals such as light and physical activity, as well as 
decreased exposure to such signals, as often occurs with increasing 
age. Despite normal total sleep time, there is a relative absence of a 
circadian pattern to the sleep-wake cycle such that sleep occurs in 
several distinct randomly distributed bouts. ISWR is often associated 
with neurologic impairment, foremost Alzheimer’s disease in older age; 
however, ISWR can also occur in individuals with poor sleep hygiene. 
Treatments involve multimodal interventions such as increased light 
exposure, improved sleep hygiene, and promotion of social and physi­
cal activities.
Non-24-h Sleep-Wake Rhythm Disorder 
Individuals with 
non-24-h sleep-wake rhythm disorder (“non-24”), otherwise known 
as free-running disorder (FRD), have endogenous circadian rhythms 
that are not synchronized with the external 24-h day-night cycle due 
to an inability to readjust the circadian clock to the 24-h day on a daily 
basis. This most commonly occurs in individuals who are completely 
blind (i.e., lacking all photoreceptors) since they are unable to respond 
to daily light cues that normally would reset the endogenous circa­
dian clock (although the condition has also been reported in sighted 
individuals). Instead, the sleep-wake period length corresponds to 
the individual’s endogenous circadian rhythms, which are typically 
slightly longer than 24 h, thereby shifting sleep and wake cycles over 
time in relation to the light-dark cycle. Instead of sleeping at the same 
time each day, their sleep time would gradually be delayed each day 
until their sleep period literally goes “around the clock.” Depending 
on the individual’s endogenous rhythm, the individual will take a 
given number of days to realign their endogenous phase (in a 360° 
phase plot) with the zero time point in the exogenous 24-h light-dark 
cycle. Because of this chronic cycling, prominent symptoms of non-24 
include sleep-wake cycle disruption (insomnia and daytime sleepi­
ness), impaired alertness and mood levels, and severe difficulties par­
taking in normally scheduled work, school, or social activities. Non-24 
can be diagnosed following diurnal analysis of an individual’s melato­
nin or cortisol rhythms, in combination with analyses of sleep diaries

where the sleep onset and offset can be visualized over time to identify 
the free-running period. Treatments for sighted non-24-h patients 
include a combination of bright-light therapy with appropriately timed 
melatonin administration, whereas melatonin and dual melatonin 
(MT1 and MT2) receptor agonist administration in completely blind 
non-24-h patients has been shown to entrain free-running rhythms 
and improve symptoms.
Jetlag 
Most have experienced symptoms associated with jetlag, 
including insomnia, daytime sleepiness, and fatigue, when traveling 
from one time zone to another, as one’s endogenous circadian rhythms 
are not yet aligned, or entrained, to the new external light-dark cycle. 
This is due to the slowness of the circadian system to adapt to the new 
time zone. Typically, the human circadian system can shift up to ~1.5 h 
a day in the westward direction (i.e., a phase delay), whereas it shifts 
more slowly (up to ~1 h daily) with eastward direction of travel (i.e., 
achieving a phase advance). Usually, symptoms of jetlag abate within 
the first couple of days after traveling and may present themselves after 
a first night of good sleep (which is more dependent on a high buildup 
of homeostatic sleep pressure). Older individuals (age >50) appear to 
be more at risk. While symptoms are transient, therapeutic approaches 
aim to hasten the synchronization of internal and external circadian 
cycles. Behavioral treatments include appropriately timed bright-light 
exposure and avoidance of bright light during the nighttime in the new 
destination, while pharmacologic approaches include timed melatonin 
administration before bedtime both prior to and following travel, 
resulting in improved sleep quality and decreased night waking.
Social Jetlag 
Individuals with a late chronotype are prone to suffer 
from “social jetlag,” a phenomenon in which individuals are forced to 
awaken at a point at which their bodies are entrained to be asleep due 
to discrepancy between alignment of social and biological time. Social 
SLEEP
FASTING
WAKE
FEEDING
CNS
Inhibition of hunger
Melatonin and GH secretion
Neurotoxic substance clearance
Memory consolidation
Muscle
Oxidative metabolism
Adipose
Lipid catabolism
Leptin secretion
Liver
Gluconeogenesis
Glycogenolysis
Mitochondrial biogenesis
Cholesterol synthesis
Pancreas
Glucagon secretion
FIGURE 498-3  The circadian clock partitions behavioral, physiologic, and metabolic processes according to time of day. The partitioning of metabolic processes to 
appropriate times of day is critical for the maintenance of health from cellular to mammalian organisms. This figure highlights which processes peak within the central 
nervous system (CNS), muscle, adipose, liver, and pancreas during either the sleep/fasting or wake/feeding cycle in humans. GH, growth hormone.

jetlag can be estimated using questionnaires, such as the MCTQ, to 
compare sleep timing on working or school days compared with free 
days. This has established that a large proportion of the European 
population suffers from 2 or more hours of social jetlag. Chronic 
social jetlag is associated with an increased risk of developing obesity 
and metabolic syndrome, as well as with greater alcohol consumption, 
smoking, and poorer academic performance in students.

The aforementioned categories of defined clinical circadian disor­
ders have been traditionally established based on consideration of the 
endogenous behavioral and physiologic cycles (primarily of melatonin 
and temperature) with the external 24-h light-dark cycle. In the fol­
lowing sections, we build on the concepts of circadian behavioral dis­
orders to consider new and emerging insight into the role of circadian 
disruption in organismal homeostasis (Figs. 498-3 and 498-4) and the 
availability of genetic strategies to dissect the interrelationship between 
clock function, health, and disease.
■
■ROLE OF THE CLOCK SYSTEM IN PHYSIOLOGY
Endocrine Systems Regulated by the Circadian Clock 
In 
addition to regulation of behavioral rhythms such as sleep-wake and 
fasting-feeding cycles, the circadian clock also regulates rhythms of the 
endocrine system. Cortisol rhythms are regulated through a feedback 
loop known as the HPA axis. Hypothalamic secretion of CRH and 
AVP promotes secretion of pituitary ACTH, which in turn regulates 
rhythmic cortisol secretion from the adrenal cortex. Cortisol release 
increases toward the morning, and this increase is believed to prepare 
the brain and peripheral tissues for daytime activity and food intake. 
AVP secretion in mice occurs prior to sleep to promote water intake, 
thereby preventing dehydration during the sleep period. Several hor­
mones, such as growth hormone (GH), cortisol, and melatonin, are 
influenced not only via circadian regulation, but also by sleep. For 
CHAPTER 498
The Role of Circadian Biology in Health and Disease  
CNS
Hunger signals
Foraging behavior
Cortisol secretion
Neuronal activity
Muscle
Fatty acid uptake
Glycolytic metabolism
Adipose
Lipogenesis
Adiponectin production
Liver
Glycogen synthesis
Bile acid synthesis
Pancreas
Insulin secretion

Circadian
desynchrony
CNS
Depression
Cognitive decline
Pancreas
Hypoinsulinemia
Muscle
Insulin resistance
Sarcopenia
Vasculature
Adrenals
Hematopoetic
Chronic stress
Disrupted HPA axis
Autoimmunity
FIGURE 498-4  Pathologies resulting from circadian desynchrony. Circadian rhythm sleep disorders, including advanced/delayed sleep phase disorder, jet lag, social 
jet lag, and shift work, result in a desynchrony between the environmental light-dark cycle “time” and the endogenous clock “time.” Pathologies can thus arise through 
misalignment imposed by exogenous (e.g., altered light cycle and/or feeding rhythm) and endogenous factors (e.g., mutations in core clock genes). Such desynchrony results 
in a host of wide-ranging pathologies across multiple tissues, including hypoinsulinemia (pancreas), disrupted hypothalamic-pituitary-adrenal (HPA) axis, autoimmunity, 
hypertension, obesity, and metabolic syndrome. CNS, central nervous system; IBD, inflammatory bowel disease.
PART 20
Emerging Topics in Clinical Medicine
instance, both GH secretion and the cortisol awakening response 
(CAR, i.e., the peak in cortisol soon after waking) are profoundly 
blunted by acute overnight wakefulness. GH secretion is primarily 
dependent on the occurrence of slow-wave sleep, which is a homeo­
statically driven sleep stage that occurs primarily in the first part of 
the sleep period. Both the CAR and daytime cortisol levels are also 
modulated by light exposure levels. Sleep also influences melatonin 
amplitude, such that sleep deprivation can increase melatonin levels. 
As sleep deprivation is often accompanied by artificial nighttime light 
exposure, the effect on melatonin can be combinatorial. In working 
environments, the effects of curtailed sleep are often confounded by 
mistimed exposure to light. The sensitivity to light levels that suppress 
melatonin can vary by an order of magnitude or more in individuals. 
This partly explains how even low levels of light can potently suppress 
melatonin secretion. Together with altered timing in light exposure, 
perturbed hormonal levels likely represent a mechanism through 
which altered timing and duration of sleep can impact central and 
peripheral circadian oscillators.
Centrally controlled rhythms of melatonin and cortisol are con­
sidered key regulators of extra-SCN and peripheral oscillators. Glu­
cocorticoid receptors exist in both the central nervous system and in 
peripheral tissues such as skeletal muscle, liver, and adipose tissue. 
Upon acute shifts in light-dark or feeding cycles, rhythmic levels in 
cortisol appear to modulate the rate at which behavioral and physi­
ological rhythms phase shift. Indeed, glucocorticoids regulate clock 
gene expression in muscle, kidney, and lung, and the powerful syn­
thetic glucocorticoid dexamethasone is often employed in vitro for its 
ability to synchronize (e.g., reset) circadian rhythms of cells, including 
liver cells. Consistent with a role for glucocorticoid regulation of the 
clock, both adrenalectomy, which results in a lack of cortisol, and 
exogenous corticosteroid supplementation significantly disrupt the 
circadian clock system.
Several peripherally produced hormones and peptides are not only 
produced rhythmically but can also feed back to central clocks, includ­
ing within the SCN. For instance, both cortisol and thyroid hormones 
regulate their own rhythmic synthesis by feedback to central brain 
regions, i.e., the hypothalamus (for cortisol) and pituitary (for both 
hormones). Several other peripherally produced factors have been 

Liver
Circadian rhythm
sleep disorders
Dyslipidemia
Steatosis
Metabolic syndrome
Jet lag
Shiftwork
Advanced/delayed
sleep disorder
Adipose
Obesity
Intestine
Steatorrhea
IBD flare
Circadian dysbiosis
Fibroblasts
Thromboembolic events
Hypertension
Increased circulation of
inflammatory cytokines
Tumorigenesis
proposed to influence the central clock, including fatty acids produced 
by the adipose tissue and fibroblast growth factor 21, a hormone pri­
marily produced by the liver. Peripheral hormones that signal energy 
state and hunger also exhibit circadian rhythms that are regulated by 
local tissue clocks. The most extensively studied of these hormones are 
leptin, which is released from white adipose tissue cells, and ghrelin, 
which is released from specific endocrine cells in the upper fundus 
region of the stomach. Ghrelin also exhibits significant peaks related 
to anticipated meal timing, which persist for several days of fasting 
in humans. Circulating rhythms of leptin and ghrelin are disrupted 
in circadian mutant mice and in humans experiencing circadian 
misalignment, with evidence for sex-specific effects. Per and Cry 
mutant mice exhibit severely blunted leptin rhythms, and wild-type 
mice exposed to jetlag (through repeatedly altered light-dark cycles) 
show a reduced wake-associated decrease in leptin. Similarly, humans 
forced to live 28-h days exhibit increased 24-h profiles of ghrelin and 
decreased levels of leptin. Ghrelin and leptin signal to several regions of 
the brain, including integrative appetitive regions of the hypothalamus 
such as the arcuate and paraventricular region. The response to these 
hormones is rhythmically regulated by the molecular clock within sev­
eral such central sites, effectively gating how these hormones influence 
rhythms of food intake and energy homeostasis in a time-of-day– and 
nutrient-dependent manner.
Role for the Clock in Metabolic Homeostasis 
Circadian con­
trol of glucose homeostasis has long been recognized, as early studies 
demonstrated variation in glucose tolerance and insulin action across 
the day. For example, due to a combination of circadian control of both 
peripheral insulin sensitivity and pancreatic β-cell insulin secretion, 
oral glucose tolerance is lower in the evening and afternoon compared 
with the morning. Another example is the “dawn phenomenon,” 
whereby glucose levels peak prior to the onset of activity. Further, 
destruction of the SCN has been shown to abolish circadian regulation 
of glucose metabolism in rats, and daily cycles of insulin secretion and 
glucose tolerance are often perturbed in patients with type 2 diabetes, 
who also exhibit changes in gene expression rhythms in peripheral 
tissues such as adipose tissue. Changes in rhythmic parameters such 
as insulin secretion have also been observed in first-degree relatives

of patients with type 2 diabetes, possibly highlighting a key hereditary 
role for the circadian clock in the pathogenesis of metabolic disease.
Ablating clock genes in mice has revealed a key function for both 
central and peripheral clocks in regulating energy homeostasis. The 
circadian system has been shown to regulate rhythmic insulin secre­
tion from the pancreas via both neural signals and hormonal levels 
(e.g., cortisol and norepinephrine), as well as via cell-autonomous 
clock regulation within the pancreatic β cell itself. An early observa­
tion was that whole-body Clock∆19/∆19 mutant mice developed obesity 
without displaying hyperinsulinemia, a phenomenon that indicated 
concurrent β-cell failure. This was later confirmed using pancreas- 
and β-cell–specific Bmal1-deficient mice, which exhibited glucose 
intolerance, hypoinsulinemia, and impaired glucose-stimulated insulin 
secretion. The molecular clock within other peripheral tissues such as 
liver, adipose tissue, and skeletal muscle also regulates circadian fluc­
tuations in insulin sensitivity and glucose disposal, which are highest in 
the morning and decline toward the evening in humans. Liver-specific 
ablation of Bmal1 in mice has revealed that the liver clock promotes 
gluconeogenesis, glycogenolysis, and mitochondrial oxidative metabo­
lism in the sleep/fasting period, while promoting glycogen synthesis in 
the wake/feeding period. Muscle-specific Bmal1-deficient mice display 
reduced glucose tolerance, concomitant with lower levels of proteins 
involved in glucose uptake by muscle cells (e.g., the glucose transporter 
GLUT4). Ablation of the Cry1 and Cry2 repressors in the negative limb 
of the clock alters glucagon and glucocorticoid signaling in the liver, 
contributing to hyperglycemia and impaired glucose tolerance in these 
mutant mice. Together, these genetic studies in mice suggest a role for 
tissue-specific clocks in the partitioning of energy utilization across the 
sleep-wake cycle.
Importantly, peripheral clocks also interact with other environ­
mental factors such as diet and time of feeding. For example, high-fat 
feeding leads not only to obesity and metabolic syndrome in mice, 
but also to perturbed clock gene expression across multiple peripheral 
tissues and a disrupted sleep-wake/fasting-feeding cycle, as revealed 
by increased activity and feeding during the daytime, the normal rest 
period in mice. Furthermore, mice that are fed a high-fat diet exclu­
sively during their (inactive) light phase gain significantly more weight 
than mice that are fed the same diet during the dark period—the active 
period for mice. Additionally, the metabolic phenotypes arising from 
ad lib high-fat feeding can be significantly ameliorated by restricting 
the time of high-fat feeding exclusively to the dark period. Animals 
with disrupted clock throughout the hypothalamus and SCN exhibit 
mistimed eating and adverse metabolic rhythms that can be restored 
by dark-only feeding. Time-restricted feeding can also increase the 
activity of brown adipose tissue in mice and reduce hepatic glucose 
production to instead promote beta oxidation of fatty acids. The poten­
tial clinical utility of time-restricted eating (TRE) has been corrobo­
rated in human interventional studies. These have demonstrated that 
dietary interventions modulate transcriptional rhythms across tissues 
and that TRE can improve metabolic homeostasis as well as promote 
weight loss. Compared with calorie restriction, TRE has repeatedly 
been shown to promote weight loss by reducing calorie intake without 
the need to actively count calories. Time-restricted eating may also 
modulate the central regulation of sleep and hunger, as studies have 
found that humans who restrict their food intake to a shorter than 
ad lib period also consume fewer daily calories and report both lower 
hunger and improved sleep. In the setting of critical illness, nutrition 
is often provided at the incorrect phase of the light-dark cycle, and 
interventions to align feeding with environmental zeitgeibers may 
improve metabolic health. There is also some evidence that consuming 
a greater proportion of daily calories early compared with later in the 
day confers metabolic advantages, including weight loss. One contrib­
uting mechanism may be that diet-induced thermogenesis (energy 
expenditure elicited by food intake) is higher in the morning compared 
with evening and that daytime hunger ratings are lower when calories 
are preferentially consumed earlier versus later in the day.
Finally, animal studies have further shown that when the light-dark 
cycle is disrupted or when animals are subjected to conditions mimick­
ing “jetlag” by artificially advancing or delaying the daily light period, 

there is desynchronization among circadian clocks and subsequent 
weight gain. Accumulating evidence in humans also finds that circa­
dian misalignment both disrupts and desynchronizes circadian clocks 
across tissues. Clinical studies that have sampled tissues such as blood, 
skeletal muscle, and adipose tissue at regular intervals have observed 
disruptions in the day-night rhythms in clock and metabolic genes 
following sleep-wake interventions. Prolonged circadian misalignment 
using forced desynchrony protocols reduces insulin sensitivity in the 
pre- and postprandial states. Under such conditions, insulin secretion 
fails to suppress glucose levels, suggesting inadequate β-cell compensa­
tion. Moreover, resting metabolic rate declines significantly both in the 
awake and sleeping state, altogether providing potential explanations 
why shift work can increase the risk of obesity, type 2 diabetes, and the 
metabolic syndrome.

Human genetic association studies also support a role for clock 
genes in metabolic homeostasis and β-cell function. Carriers of a 
certain BMAL1 polymorphism have a greater risk of developing type 2 
diabetes, while CLOCK variants have been found to interact with diet, 
such that variants can have a protective effect on insulin sensitivity in 
individuals with high monounsaturated fat intake or in individuals 
provided a low-fat diet. In contrast, the minor allele of another CLOCK 
gene variant has been associated with increased waist circumference, 
but only in those with high saturated fat intake. Similarly, NPAS2 and 
BMAL1 variants have been associated with a greater risk of hyper­
tension. Melatonin receptor MTNR1B gene variants that result in 
increased expression of MTNR1B have been associated with elevated 
fasting blood glucose levels and reduced insulin secretion irrespective 
of their level of glycemic control, although how melatonin regulates 
glucose homeostasis remains incompletely understood. These associa­
tion studies highlight the role of the circadian system in metabolism, as 
well as the potential for interactions of external perturbations—such as 
circadian misalignment—with a protective or adverse genetic profile.
CHAPTER 498
A large proportion of society recurrently shifts sleep-wake and eat­
ing times between working/nonfree days and free days. This social 
jetlag has been increasingly tied to metabolic disruptions, including a 
greater risk of obesity and type 2 diabetes. As this involves recurrent 
phase advances and phase delays—like shift work but often of smaller 
magnitude—it is possible that social jetlag, and often interlinked eat­
ing jetlag, also results in perturbed rhythms of energy expenditure in 
combination with disruptions to the circadian hunger drive, further 
increasing the risk of obesity. Repeated shifts in the food- and SCNdriven rhythm of insulin release may similarly over time increase the 
risk of type 2 diabetes. Shifted feeding rhythms in relation to the sleepwake cycle and the timing of SCN activity may be causally involved in 
this pathogenesis. This is exemplified by the disorders known as nighteating syndrome and sleep-related eating disorder. In the former syn­
drome, a large part of daily calorie consumption occurs in the evening 
and nighttime hours, and this shifted meal pattern has been associated 
with a delayed timing of the internal clock. Some evidence exists that 
these syndromes are associated with obesity. Individuals who report 
sleeping fewer hours or who are subjected to restricted sleep for a 
few consecutive days have also been found to consume more calories, 
especially later in the evening, a period during which prolonged fast­
ing favors oxidative fuel utilization. As such, this may explain why 
sleep restriction increases the risk of obesity. These associations have 
also been observed in individuals with later onset of sleep, i.e., evening 
chronotypes. Night-eating syndrome and later chronotypes have also 
been linked to type 2 diabetes and may be more common than other 
eating disorders such as binge-eating disorder. Both conditions have 
also been found to be associated with impaired glycemic control—such 
as a greater likelihood of hemoglobin A1c values exceeding 7%—in 
patients already suffering from type 2 diabetes. This emphasizes how 
proper alignment of internal circadian rhythms with external factors 
are key contributing factors for long-term metabolic homeostasis.
The Role of Circadian Biology in Health and Disease  
Circadian Clocks in Relation to Brain Health and Cogni­
tion 
Molecular circadian clocks are present not only within the 
extra-SCN regions of the brain, but also in neurons, astrocytes, microg­
lia, and cells of the blood-brain barrier. Emphasizing the functional

significance of properly aligned clocks for brain health, shift work­
ers have been found to have decreased gray matter in brain regions 
involved in memory and executive functions, with more notable effects 
in individuals who had shorter recovery periods between the onset of 
each shift work cycle. Adults performing rotating shift work for many 
years have also been shown to exhibit signs of accelerated cognitive 
aging. Notably, evidence suggests that these effects may be reversible, as 
those who stopped carrying out shift work exhibited normal cognitive 
performance 5 or more years later.

Studies have also uncovered an important role for perturbed circa­
dian and sleep-wake rhythms in neurodegenerative conditions such as 
Alzheimer’s disease (AD), Huntington’s disease (HD), and Parkinson’s 
disease (PD). Amyloid beta (Aβ), a key pathognomonic component 
of AD, normally exhibits circadian fluctuations in the extracellular 
space in the brain, as well as in the cerebrospinal fluid and plasma in 
humans, peaking during the active period and falling during sleep. Of 
note, these daily rhythms of Aβ accumulation are dampened in mice 
that are prone to develop AD; reduced plasma Aβ fluctuations have 
also been noted in older compared with younger individuals. Animal 
studies indicate that removal of Aβ (and other neurotoxic substances) 
during the nighttime sleep period is facilitated by a lymphatic-like 
system that relies on glial cells (the “glymphatic” system). Relevance of 
this system to humans is suggested by the observation that non–rapid 
eye movement (NREM) sleep is accompanied by hemodynamic fluc­
tuations that alter the flow of cerebrospinal fluid, which can remove 
toxins such as Aβ. Consistent with a role for circadian rhythms in the 
pathogenesis of AD, ablation of core clock genes throughout the brain, 
within subregions of the brain or within glia, leads to pathology such as 
oxidative stress, neuronal cell death, and scarring of brain tissue (astro­
gliosis). Furthermore, perturbed light-dark cycles increased pathology 
associated with oxidative stress, and single nucleotide polymorphisms 
in CLOCK and BMAL1 have been associated with increased risk of 
developing AD.
PART 20
Emerging Topics in Clinical Medicine
Evidence also indicates that the relationship between the circadian/
sleep-wake system and AD is bidirectional. For example, patients suf­
fering from AD exhibit several signs of perturbed circadian rhythms, 
the most prominent of such phenomena being “sundowning,” whereby 
AD patients become more agitated and exhibit delirium-like symptoms 
in the afternoon or evening. Studies have furthermore indicated that 
in severe forms of AD, the circadian rhythm is phase delayed. Aged 
AD-prone mice also display perturbed sleep-wake patterns, which can 
be corrected by immunization against Aβ or by an orexin antagonist. 
Further research will help uncover the primary role of the circadian 
system in disease pathology, independent of the contribution from 
perturbed sleep, in conditions like AD. Notably, evidence suggests that 
interventions that increase daytime light exposure and that include 
melatonin supplementation ameliorate symptoms of AD, presumably 
by counteracting disrupted circadian rhythms.
Meta-analyses of cohort and longitudinal studies support an asso­
ciation between shift work and the risk of depression, with greater risk 
in women. This relationship is bidirectional, as disruption of sleep and 
circadian rhythms is a key feature of depression and multiple other 
neuropsychiatric conditions. Two important factors for why mis­
aligned sleep increases the risk of neuropsychiatric conditions may be 
mistimed light exposure and disrupted 24-h rest-activity rhythms. In 
cross-sectional and longitudinal analyses, greater time spent outdoors 
during the day has been associated with fewer symptoms of insomnia, 
lower risk of developing depression, and less need for antidepressive 
medication. Similarly, decreased rest-activity rhythms are associated 
with lower subjective happiness and reaction time and a greater lifetime 
risk of major depressive or bipolar disorder. This may be partly due to 
genetic variation, as clock genes have been implicated in depression 
and mood both in human and genetic animal studies. Polymorphisms 
in genes that regulate sleep and circadian rhythms—for instance, a long 
gene variant of PER3—have also been linked to bipolar disorder and 
schizophrenia, while CRY2 and CLOCK gene polymorphisms are asso­
ciated with seasonal affective disorder, a type of depression arising in 
the fall and winter months when the levels of sunlight are lowest. Bipo­
lar disorder is furthermore often triggered by circadian disruptions 

or curtailed sleep. Both bipolar disorder and schizophrenia have been 
linked to various forms of circadian disruption following disease onset, 
and a critical component of disease treatment often involves normal­
izing sleep and sleep-wake rhythms.
Sleep deprivation by itself is known to reduce alertness, impair 
decision-making, and increase risk for accidents—after 18–24 h of con­
tinuous wakefulness, several skills exhibit the same degree of decline as 
following mild alcohol intoxication. However, cognitive abilities may 
suffer even further when sleep restriction is combined with circadian 
misalignment as in shift work. In one study, participants were subjected 
to ~43-h long days in parallel with reduced sleep (equivalent to 5.6 h of 
sleep in a 24-h period), yielding a forced desynchrony protocol coupled 
with sleep loss. When subjects were tested at the nadir of their circa­
dian period, the subjects’ reaction speed dropped almost by an order 
of magnitude compared with controls. In another study, researchers 
noted almost a 36% greater incidence of serious medical errors in 
resident interns who regularly worked 24-h or longer shifts compared 
with those who were randomly assigned to work up to 16-h-long shifts. 
Furthermore, errors that resulted in patient death were three times 
more likely to occur in residents working extended hours compared 
with those who only worked up to 16-h-long shifts.
Circadian Regulation of Gastrointestinal Homeostasis and 
the Microbiota 
Physiologic aspects of the gastrointestinal (GI) 
tract exhibit day-night variations that anticipate and prepare for food 
intake and digestion during the active period. Gastric emptying and 
colonic motility are considerably greater during the active phase, as 
the phasic motor program supporting movement of digested mate­
rial along the intestine is approximately twice as fast during the day 
compared with night. Bile acid secretion also exhibits circadian rhyth­
micity in the intestine, as do absorption and the expression of many 
nutrient uptake transporters in the intestinal wall, including the main 
glucose transporter protein SGLT1. The permeability of the intestinal 
wall also varies throughout the sleep-wake cycle, and mice exposed to 
chronic sleep fragmentation exhibit increased intestinal permeability, 
which may enable inflammatory molecules from bacteria to reach the 
systemic circulation.
The composition and function of the fecal microbiome (i.e., the gut 
microbiota) also display circadian rhythmicity, orchestrated by both 
host circadian clock gene expression and food intake rhythms. Accord­
ingly, circadian disruption, either by environmental or genetic means, 
perturbs these microbial rhythms, disrupting both bacterial levels and 
the metabolic functions of the gut microbiota. For example, alterations 
in the expression and functions of the gut microbiota have been noted 
in humans exposed to acute jetlag, and evidence suggests that curtail­
ing sleep, which often accompanies shift work and jetlag, can alter the 
gut microbiota. Corroborating the importance of the daily timing of 
food intake, interventions with meals scheduled earlier versus later in 
the day, or that involve time-restricted eating, have been found to alter 
the composition of the gut microbiome in humans, although the causal 
relevance of this remains to be ascertained.
By increasing local and systemic inflammation, circadian disrup­
tion of the gut microbiota may be causally involved in increased risk of 
inflammatory bowel disease (Crohn’s disease and ulcerative colitis) and 
colon cancer in shift workers. Biological sex differences have also been 
reported, as female mice display more pronounced microbial rhythms. 
Interestingly, the gut microbiome has also been shown to influence the 
rhythms of host tissues, such as the intestine and liver, that also appear 
sex-specific. This relationship indicates that a bidirectional interaction 
exists between tissues that regulate metabolic processes and the gut 
microbiome across the sleep-wake cycle. These findings may further­
more have clinical implications, given that the gut microbiome may 
both directly (in the gut lumen) and indirectly (through host-microbi­
ota interactions such as through signaling molecules) impact metabolic 
responses and pharmacokinetic and pharmacodynamic properties of 
therapeutic drugs across the 24-h day-night cycle.
Cardiovascular Health and the Circadian Clock 
An early 
epidemiologic observation was a greater incidence of myocardial 
infarction in the morning hours, with the lowest risk during the

period preceding sleep. Other cardiovascular outcomes such as sudden 
cardiac death and syncope also exhibit a daily peak in the morning. 
Blood pressure (BP) typically peaks around 2100 h and decreases later 
during sleep. The postexercise recovery response of BP is faster in 
the late afternoon compared with the morning, and the daily timing 
of physical activity has been found to modulate the risk of all-cause 
and cardiovascular disease mortality. The lowering of BP during sleep 
is partially due to a circadian nighttime dip of around 3–6 mmHg in 
systolic BP (SBP) and 2–3 mmHg in diastolic BP (DBP). A dip in BP 
of either <10% or >20% during normal sleep has been associated with 
worse cardiovascular prognosis and risk of dementia. Nighttime BP 
dipping is also often disrupted in sleep-wake disorders and correlates 
with increased cardiovascular disease risk in conditions such as insom­
nia and narcolepsy. Conversely, specifically lowering nighttime BP has 
been found to confer a lower prospective risk of cardiovascular disease.
In addition to BP, heart rate also typically decreases during sleep, 
while mistimed sleep leads to higher heart rate during the sleep period. 
Studies also suggest that heart muscle may be more tolerant to hypoxia 
and thus fare better under surgery scheduled for the afternoon due to 
timing of cellular programs driven by the cell autonomous clock in car­
diomyocytes. Thus, a combination of factors—which may also involve 
altered glucocorticoid levels and increased platelet aggregation—may 
contribute to a greater risk of cardiovascular disease in the morning. 
Subsequent epidemiologic studies also have demonstrated that shift 
work increases the risk of dyslipidemia and hypertension, as well as the 
risk of coronary heart disease, including myocardial infarction. These 
findings are in line with interventional findings in which circadian 
misalignment has been induced either by inverting the sleep-wake 
cycle or by imposing days that are far outside what the endogenous 
circadian clock can adapt to (i.e., either too short [e.g., 20-h] or too 
long [e.g., 28-h]). These studies in healthy human subjects have found 
that circadian misalignment elevates 24-h BP, particularly during sleep. 
These changes may be causally related to how the autonomic system is 
regulated during sleep, as evidenced by reduced vagal cardiac control 
when the sleep-wake cycle is inverted.
Circadian Disruption and Cancer 
In 2007, the International 
Agency for Research on Cancer (part of the World Health Organiza­
tion) declared that shift work that involves circadian disruption is likely 
carcinogenic to humans. While evidence for an association between 
shift work and general cancer incidence is mixed, accruing evidence 
supports a link between shift work and increased risk of developing 
colon and breast cancer, as well as having a poorer cancer prognosis. 
Telomere shortening, a phenomenon in aging that destabilizes the 
genome, has also been observed in shift workers as well as in individu­
als suffering from short sleep. Such changes may reduce the ability of 
damaged or senescent cells to undergo apoptosis and, instead, lead to 
uninhibited cell growth and cancer. An indirect role for the circadian 
clock has also come from retrospective studies on how cancer risk is 
related to food timing and duration of the nighttime fast in humans. 
In combination with interventional studies on time-restricted feeding, 
these findings suggest that limiting food intake to a restricted period 
of the day, optimizes circadian processes thereby reducing the risk of 
potentially carcinogenic cell damage. Studies of recurring fasting have 
also shown that it lowers the risk and delays the onset of cancer.
Experimental genetic evidence has also implicated clock disruption 
as a factor in tumorigenesis. Genetic loss of Per2 or Bmal1 has been 
shown to promote lung tumorigenesis, while studies in Per2 mutant 
mice have also revealed increased radiation-induced lymphoma asso­
ciated with dysregulation of the cell cycle. However, disruption of the 
Cry gene in mice has also been implicated in tumor protection due 
to increased susceptibility to cell death. In contrast, pharmacologic 
overactivation of REV-ERB may impair growth of glioblastomas. While 
epidemiologic, experimental, and chronotherapeutic evidence (see sec­
tion “Chronotherapy and Future Directions”) suggests a link between 
circadian disruption and cancer, the precise role of circadian systems 
in tumorigenesis remains to be determined.
Circadian Regulation of the Immune System 
Circadian mis­
alignment and sleep restriction both alter population levels of immune 

cells and decrease the ability of immune cells to produce reactive radi­
cals, in part likely through disruption of cytokine rhythms. Chronic 
circadian disruption may thereby impair the immune system’s ability 
to conduct immunosurveillance at the proper time of day. This may 
reduce the ability to mount an appropriate pathogen-induced effector 
(cytotoxic T-cell) response during the active period, as well as impair 
the more long-term adaptive immune response, which is favored by the 
cytokine milieu (e.g., surges in prolactin and GH) that accompanies 
the recovery/sleep phase. Instead, circadian misalignment increases a 
range of clinically used inflammatory markers (e.g., C-reactive protein, 
tumor necrosis factor α, and interleukin 6), and such changes have 
been noted even when the sleep-wake cycle is only prolonged to a 
slightly longer than normal 24.6-h day. While similar effects are also 
observed following acute total sleep deprivation or recurrent partial 
sleep restriction, circadian misalignment has been found to promote 
an even more pronounced elevation of such markers. Genetic clock 
disruption in peritoneal macrophages has also revealed clock control 
of Toll-like receptor 9, which is responsible for identifying molecules 
from foreign pathogens. Clock knockout mice also have reduced 
T-cell antigen response, and mice immunized during the day had a 
stronger T-cell response than mice immunized at night, supporting 
regulation of the immune system by the clock. Similar mechanisms 
likely take place in humans, as clinical studies have noted an impaired 
vaccine response following sleep disruption, and several studies show 
improved immunogenic response to various antigens when vaccinated 
in the morning compared with afternoon.

Aging and the Circadian Clock 
Instability in the clock system 
is an often-overlooked hallmark of aging. Aging is associated with 
a decline in the robustness of intrinsic rhythmic processes at the 
behavioral, physiologic, and molecular levels in both human and 
animal models. At the behavioral level, aging leads to reduced and 
fragmented sleep, dampened locomotor activity and feeding rhythms, 
and a reduced ability to entrain to light, as old rodents are 20 times less 
sensitive to the entraining effects of light relative to young animals. 
Even middle-aged individuals exposed to jetlag exhibit more symp­
toms of circadian misalignment, such as increased time awake and 
reduced alertness, compared with young individuals. On a physiologic 
level, some of the hallmarks of aging are a reduction in amplitude 
(e.g., flattening of circadian pattern) of circadian processes, which 
can also be seen at the cellular level in peripheral cells isolated from 
older compared with younger individuals. This dampening of rhythms 
also impacts the circadian signal during the evening period (the wake 
maintenance zone). Epidemiologic evidence indicates that a dampened 
rest-activity amplitude is associated with an increased prospective risk 
of a range of common health conditions, such as dementia, CVD, can­
cer, and all-cause mortality.
CHAPTER 498
The Role of Circadian Biology in Health and Disease  
Aging also results in a phase advance (e.g., a shift in the timing of the 
peak or nadir) in rhythms of the endocrine and neuroendocrine sys­
tems, including sleep onset and offset. For example, cortisol, dehydro­
epiandrosterone (DHEA), and melatonin all have dampened rhythms 
and are phase advanced in aging; the combination of such changes may, 
for instance, contribute to more fragmented sleep and lower levels of 
restorative slow-wave sleep in aged individuals. Relatedly, aging results 
in reduced peptide expression in the SCN (VIP and AVP), cell loss in 
sleep-wake regions (including the SCN), and reduced amplitude of 
rhythms of SCN electrical activity. Further, while the SCN-dependent 
body temperature rhythm—a generally accepted marker for the integ­
rity of circadian rhythms—peaks in the evening and is lowest in the 
early morning in young individuals, aged healthy subjects display a 
phase advance and a decrease in circadian amplitude in body tem­
perature rhythms. Indeed, evidence suggests that internal desynchrony 
between core body temperature rhythms and the sleep-wake cycle may 
contribute to age-associated circadian alterations.
On a molecular level, aging is associated with decreased expression 
and altered diurnal profiles of several of the core clock genes, includ­
ing Clock and Bmal1, within both SCN and peripheral tissues such as 
heart and liver. The acute induction of Per1 in response to light was 
markedly reduced in the SCN of aged mice compared with young mice,

potentially contributing to their delayed response to light entrainment. 
Mice lacking Bmal1 die prematurely compared with control mice, con­
sistent with premature accumulation of reactive oxygen species. These 
mice have an accelerated onset of numerous age-related pathologies, 
including cataracts, sarcopenia, reduced organ size, and decreased hair 
growth. Instead, deficiency of cryptochrome, a repressor of the core 
clock repressor, has been associated with alterations in liver regen­
eration, while BMAL1 and PER2 may be important for proper neuro­
genesis in the hippocampus, a brain region in which adult mammals 
normally exhibit continuous cell division. Altogether, this suggests that 
the highly conserved circadian clock is important for regulating a wide 
range of homeostatic processes, including cell-cycle pathways, which 
when properly phased to each other promote organismal fitness.

Shift workers have been found to exhibit molecular signs of accel­
erated aging, as measured by an accelerated DNA methylation clock. 
Measurements of altered circadian rhythms with age may serve as 
a useful biomarker for aging. An intriguing question is whether the 
decline in amplitude of rhythms correlates with a decline in func­
tion and, importantly, whether restoration of these rhythms with 
age, through either behavioral or pharmacologic intervention, would 
delay the aging process. Studies in mice indicate that behavioral and 
pharmacologic interventions (including exercise) can restore circadian 
oscillations in aging. Restoration of levels of the metabolite NAD+, 
which are reduced with aging, in old mice by supplementation with 
the NAD+ precursor nicotinamide riboside (NR) markedly restores 
rhythms of metabolic and stress response pathways, as well as late 
evening activity rhythms, that decline with aging through inhibition of 
the clock repressor PER2. Similarly, transplantation of the SCN from 
a young rat into an old rat “rescued” the rhythms of both locomotor 
activity and corticotropin hormone (CRH), suggesting that the SCN is 
an important target for age-related changes in clocks. Physical activity 
or targeted therapeutics may therefore ameliorate some of the circadian 
deterioration in aged humans.
PART 20
Emerging Topics in Clinical Medicine
■
■CHRONOTHERAPY AND FUTURE DIRECTIONS
Chronopharmacology, also known as chronotherapy or circadian 
medicine, is a rapidly emerging field that studies how the timing 
of drug administration may impact its effectiveness. Since physi­
ologic processes vary across the day, the timing of administration 
of medication may help optimize patient care. For example, since 
endogenous cholesterol synthesis is rhythmic in liver and peaks dur­
ing the early morning hours, administration of statins (HMG-CoA 
reductase inhibitors) in the evening prior to bedtime has proven to be 
more effective than daytime administration at reducing low-density 
lipoprotein cholesterol (LDL-C) levels because the highest concentra­
tion of medication coincides with the peak in rhythmic endogenous 
cholesterol production. Given that BP exhibits a 24-h rhythm—being 
lowest during sleep—angiotensin-converting enzyme (ACE) inhibi­
tors have been shown to be most effective at night to normalize the 
BP rhythms, restoring the nighttime dip in BP that is foremost tied 
to the occurrence of sleep. Numerous studies have also demonstrated 
that administration of cancer treatments at specific times of the day 
can increase chemotherapy effectiveness while also decreasing toxicity 
for a wide range of drugs. For example, 5-fluorouracil works best to 
treat colorectal cancer when administered at night, a time when the 
cancerous cells are more vulnerable while normal cells are quiescent 
and therefore less sensitive. Doxorubicin administration early in the 
morning to treat ovarian cancer has also been shown to be less toxic, as 
white blood cells recover faster than if the drug is given in the evening. 
Finally, the more severe morning symptoms of rheumatoid arthritis 
are linked to increased inflammation toward the evening; therefore, 
prevention of the nighttime upregulation of the immune/inflammatory 
reaction is more effective when glucocorticoids are administered with a 
nighttime release formulation.
Recognition of circadian rhythms is also critical for diagnoses and 
treatment of endocrine disorders. The diagnosis of Cushing’s syn­
drome, which is characterized by hypercortisolemia, might be missed 
if the patient’s cortisol levels are measured in the morning, when 
endogenous cortisol production peaks. Therefore, clinical diagnosis 

requires cortisol to be measured in the late evening when the levels 
of this hormone should typically be low. On the other hand, adrenal 
insufficiency is diagnosed by measuring cortisol in the morning when 
at its physiologic peak, and glucocorticoid therapy for these patients 
aims to mimic the endogenous rhythms of cortisol, as short-acting 
synthetic glucocorticoids are usually given several times a day in taper­
ing doses, such that the largest amount is taken in the morning and the 
smallest in the evening.
Diabetes is another endocrine disorder intimately tied to circadian 
rhythms. Oral glucose tolerance, which is commonly used to diagnose 
diabetes, is worse in the afternoon and evening compared with the 
morning. This likely stems from greater daytime insulin sensitivity 
within peripheral tissues and reduced insulin secretion during the night. 
Similarly, due to a surge in hormone levels in the morning, diabetes 
patients may suffer from the dawn phenomenon (or dawn effect), an 
abnormally high morning increase in blood glucose due to impaired 
response in insulin secretion. A related phenomenon that can be tied 
to evening timing of insulin doses is the “rebound” or Somogyi effect. 
In this scenario, the initially noted clinical sign in the form of elevated 
glucose levels may be noted in the morning. However, the underlying 
cause is hypoglycemia occurring during the night, which produces a 
counterregulatory hormonal response that subsequently results in morn­
ing hyperglycemia. As patients with type 2 diabetes often have grossly 
impaired daily cycles of insulin secretion and glucose tolerance, this 
further highlights that time of day is an important consideration for the 
diagnosis and treatment of metabolic disorders such as type 2 diabetes. 
Another example of potential clinical relevance is how the pharmacoki­
netics of metformin—the most common treatment for type 2 diabetes—
is significantly impacted by time of day due to rhythmicity in glomerular 
filtration rate and renal plasma flow. Notably, large interindividual vari­
ability in the pharmacokinetics seems to stem mostly from differences 
in chronotype, highlighting the need for patient-specific treatments 
dictated by circadian gene-environment interactions.
Continuous measurements of 24-h glucose have provided insight 
into sleep-wake regulation of glucose metabolism. Compared with day­
time glucose levels, nighttime blood glucose levels have been found to 
more accurately predict a range of glucoregulatory parameters. Emerg­
ing evidence has also indicated that the daily timing of exercise may be 
an important determinant for more efficacious improvements in blood 
triglyceride and glucose levels. Furthermore, consideration of meal 
timing, particularly in the hospital setting, may impact patient health 
or responsiveness to treatments, as food in hospitals is often provided 
either continuously or just during the dark (rest) phase, with the latter 
being common in neonatal intensive care.
As our knowledge of the complexity of how circadian processes mod­
ulate physiology deepens, further advances to rationally develop new 
strategies for treatments of disorders affected by circadian misalignment 
are essential. For example, novel compounds have begun to emerge from 
unbiased drug discovery screens that in cell- and animal-based assays 
impact circadian clock components, either shortening or lengthening the 
period. These compounds include CRY stabilizers and various inhibitors 
of CKIδ, CKIε, and GSK-3. Pharmacologic control of the circadian cycle 
may be useful in the treatment of circadian disorders and metabolic 
disturbances with a circadian component. Understanding how the cir­
cadian clock controls biological functions will shed new light onto the 
pathogenesis of metabolic disorders with a circadian component, such as 
type 2 diabetes and metabolic syndrome, and will yield insight into how 
timing of drug delivery will impact patient care.
Acknowledgment
The authors would like to thank Billie Marcheva for her help with the 
figures and tables.
■
■FURTHER READING
Allada R, Bass J: Circadian mechanisms in medicine. N Engl J Med 
384:550, 2021.
Buxton OM et al: Adverse metabolic consequences in humans of 
prolonged sleep restriction combined with circadian disruption. Sci 
Transl Med 4:129ra43, 2012.