# 07 - 337 Inflammatory Bowel Disease

### 337 Inflammatory Bowel Disease

performed specifically to diagnose infection (e.g., Whipple’s disease 
or giardiasis). In most other instances, the infection is detected 
incidentally during the workup for diarrhea or other abdominal 
symptoms. Many of these infections occur in immunocompromised 
patients with diarrhea; the etiologic agents include Cryptosporidium, 
Isospora belli, microsporidia, Cyclospora, Toxoplasma, cytomega­
lovirus, adenovirus, Mycobacterium avium-intracellulare, and G. 
lamblia. In immunocompromised patients, when Candida, Aspergil­
lus, Cryptococcus, or Histoplasma organisms are seen on duodenal 
biopsy, their presence generally reflects systemic infection. Apart 
from Whipple’s disease and infections in the immunocompromised 
host, small-bowel biopsy is seldom used as the primary mode of 
diagnosis of infection. Even giardiasis is more easily diagnosed by 
stool antigen studies and/or duodenal aspiration than by duodenal 
biopsy.
SUMMARY
The evaluation and management of patients with disorders of absorp­
tion are challenging due to the complexity of the underlying patho­
physiology and the large number of associated diseases. A diagnostic 
approach based on the information summarized in Tables 336-1 and 
336-5 should prove useful for guiding the care of these challenging 
patients.
Acknowledgments
Henry Binder wrote this chapter in prior editions and some material from 
his chapter has been retained.
■
■FURTHER READING
Bering J, DiBaise JK: Short bowel syndrome: Complications and 
management. Nutr Clin Pract 38:S46, 2023.
Boumaza A et al: Whipple’s disease and Tropheryma whipplei infec­
tions: From bench to bedside. Lancet Infect Dis 22:e280, 2022.
Bousaba J et al: Bile acid diarrhea: As bad as it gets? Curr Opin 
Gastroenterol 39:184, 2023.
Cowardin CA et al: Environmental enteric dysfunction: Gut and 
microbiota adaptation in pregnancy and infancy. Nat Rev Gastroenterol 
Hepatol 20:223, 2023.
Fernández-Bañares F et al: Carbohydrate maldigestion and intolerance. 
Nutrients 14:1923, 2022.
Gregory M, Rubin DC: Small bowel disorders, in The Washington 
Manual Gastroenterology Subspecialty Consult, 4th ed, Gyawali CP 
et al (eds). Walters Kluwer, 2021, pp.142–155.
Jansson-Knodell CL, Rubio-Tapia A: Gluten-related disorders from 
bench to bedside. Clin Gastroenterol Hepatol 22:693, 2024.
Johnson LR: Digestion and absorption of nutrients, in Gastrointestinal 
Physiology, 9th ed. Philadelphia, Elsevier, 2019, pp 102–120.
Ozen A, Lenardo MJ: Protein-losing enteropathy. N Engl J Med 
389:733, 2023.
Zafar H et al: Small intestinal bacterial overgrowth: current update. 
Curr Opin Gastroenterol 39:522, 2023.
Sonia Friedman, Richard S. Blumberg

Inflammatory Bowel 

Disease
Inflammatory bowel disease (IBD) is a chronic idiopathic inflammatory 
disease of the gastrointestinal tract. Ulcerative colitis (UC) and Crohn’s 
disease (CD) are the two major types of IBD.

■
■GLOBAL CONSIDERATIONS: EPIDEMIOLOGY
UC and CD have emerged as global diseases in the twenty-first century. 
The disease burden is high, with a prevalence of >0.3% in North America, 
Oceania, and most countries in Europe. In newly industrialized 
countries in Africa, Asia, and South America where there is increased 
urbanization and Westernization, the incidence of IBD has been ris­
ing and mirrors the prior increase of IBD in the Western world in the 
twentieth century. For example, in Brazil, the annual percent change is 
+11.1% (95% confidence interval [CI], 4.8–17.8%) for CD and +14.9% 
(95% CI, 10.4–19.6%) for UC, whereas in Taiwan, the annual percent 
change is +4.0% (95% CI, 1.0–7.1%) for CD and +4.8% (95% CI, 
1.8–8.0%) for UC. In a study of newly diagnosed IBD cases between 
2011 and 2013 from 13 countries or regions in the Asia Pacific, the 
mean annual IBD incidence per 100,000 was 1.50 (95% CI, 1.43–1.57). 
India (9.31; 95% CI, 8.38–10.31) and China (3.64; 95% CI, 2.97–4.42) 
had the highest IBD incidences in Asia. The highest reported preva­
lence values were in Europe (UC, 505 per 100,000 in Norway; CD, 322 
per 100,000 in Germany) and North America (UC, 286 per 100,000 in 
the United States; CD, 319 per 100,000 in Canada). The most recent 
U.S. study showed that 2.39 million Americans are diagnosed with 
IBD. The most likely factors that explain the geographic variability 
of IBD rates, especially the rising incidence in developing countries 
and urban areas, are environmental variables including changes in 
diet (with downstream effects on the intestinal microbiota), exposure 
to sunlight or temperature differences, and socioeconomic status and 
hygiene (Table 337-1).

Peak incidence of UC and CD is in the second to fourth decades, 
with 78% of CD studies and 51% of UC studies reporting the highest 
incidence among those aged 20–29 years old. A second modest rise in 
incidence occurs between the seventh and ninth decades of life. The 
female-to-male ratio ranges from 0.51 to 1.58 for UC studies and 0.34 
to 1.65 for CD studies, suggesting that the diagnosis of IBD is not gen­
der-specific. Pediatric IBD (patients <17 years old) composes ~20–25% 
of all IBD patients, and ~5% of all IBD patients are <10 years old. 
Children with IBD are also grouped as those with early-onset (EO) IBD 
(patients <10 years old), very-early-onset (VEO) IBD (patients <6 years 
old), and infantile IBD (patients <2 years old). VEOIBD and infantile 
IBD mainly affect the colon and are resistant to standard medications, 
and patients often have a strong family history of IBD, with at least one 
first-degree relative affected. In infantile IBD or VEOIBD, a number of 
rare, single genetic mutations have been identified as the basis for this 
susceptibility in up to 10% of patients, suggesting a simple Mendelian 
origin of the disease in these cases.
CHAPTER 337
Inflammatory Bowel Disease 
Although the greatest prevalence of IBD is among Whites, the preva­
lence of IBD in Latinx, Black, and Asian people is increasing. Urban areas 
have a higher prevalence of IBD than rural areas, and high socioeconomic 
classes have a higher prevalence than lower socioeconomic classes.
Epidemiologic studies have identified a number of potential envi­
ronmental factors that are associated with disease risk (Fig. 337-1). 
TABLE 337-1  Epidemiology of IBD
 
ULCERATIVE COLITIS
CROHN’S DISEASE
Age of onset
Second to fourth decades 
and seventh to ninth 
decades
Second to fourth decades 
and seventh to ninth 
decades
Ethnicity
White > Black > Latinx > Asian
Female-to-male ratio
0.51–1.58
0.34–1.65
Smoking
May prevent disease 
(odds ratio 0.58)
May cause disease 
(odds ratio 1.76)
Oral contraceptives
No increased risk
Hazard ratio 2.82
Appendectomy
Protective (risk reduction 
13–26%)
Not protective
Monozygotic twins
6–18% concordance
38–58% concordance
Dizygotic twins
0–2% concordance
4% concordance
Infections in the first 
year of life
1.6 and 3 times the risk of developing IBD by age 10 
and 20 years
Abbreviation: IBD, inflammatory bowel disease.

Genetic susceptibility
TLR4
XBP1
DLG5
ECM1
ITLN1
SLC22A5
DMBT1
PTGER4
XBP1
NOD2
ATG16L1
Microbial flora
Enteropathogens
Antibiotics
Diet, hygiene
NSAIDs, smoking
PART 10
Disorders of the Gastrointestinal System
Environmental factors
FIGURE 337-1  Pathogenesis of inflammatory bowel disease (IBD). In IBD, the tridirectional relationship between the commensal flora (microbiota), intestinal epithelial 
cells (IECs), and mucosal immune system is dysregulated, leading to chronic inflammation. Each of these three factors is affected by genetic and environmental factors 
that determine risk for the disease. NSAIDs, nonsteroidal anti-inflammatory drugs. (Republished with permission Annual Review of Immunology from Inflammatory Bowel 
Disease, A Kaser et al: 28:573, 2010. Permission conveyed through Copyright Clearance Center, Inc.)
Smoking is an important risk factor in IBD with opposite effects on 
UC (odds ratio [OR] 0.58) and CD (OR 1.76) that may be influenced 
by genetic risk factors and ethnic origin. Previous appendectomy with 
confirmed appendicitis (risk reduction of 13–26%), particularly at a 
young age, has a protective effect on the development of UC across dif­
ferent geographical regions and populations. Appendectomy is mod­
estly associated with the development of CD, but this may be due to 
diagnostic bias. Oral contraceptive use is associated with an increased 
risk of CD, with a reported hazard ratio as high as 2.82 among current 
users and 1.39 among past users. The association between oral con­
traceptive use and UC is limited to women with a history of smoking. 
Breast-feeding may protect against the development of IBD, which 
supports the potential importance of early-life exposures to later IBD 
development. Infections in the first year of life are associated with 
development of IBD, especially before the ages of 10 and 20 years. 
Infectious gastroenteritis with pathogens (e.g., Salmonella, Shigella, 
Campylobacter spp., Clostridioides difficile) increases IBD risk by two- 
to threefold. Diets high in animal protein, sugars, sweets, oils, fish and 
shellfish, and dietary fat, especially ω-6 fatty acids, and low in ω-3 fatty 
acids have been implicated in increasing the risk of IBD. A protective 
effect of vitamin D on the risk of CD has been reported.
IBD is a familial disease in 5–10% of patients (Fig. 337-2), and the 
strongest risk factor for the development of IBD is a first-degree rela­
tive with the disease. The children of mothers and fathers with UC have 
an approximately fourfold increased risk of UC, and the children of 
mothers and fathers with CD have an almost eightfold increased risk of 
CD. Some of these patients may exhibit early-onset disease during the 
first decade of life and, in CD, a concordance of anatomic site and clini­
cal type within families. In twin studies, 38–58% of monozygotic twins 
are concordant for CD, and 6–18% are concordant for UC, whereas 4% 

IL23R, IL12B, JAK2, STAT3, CCR6,
NOD2, TLR4, CARD9, IRF5,
ATG16L1, IRGM, LRRK2
TNFSF15, TNFRSF6B
TNFAIP3, PTPN2/22
NLRP3, IL18RAP
ICOSL, ARPC2, STAT3, IL10
Immune dysregulation
IEC
Stress
Diet, hygiene
of dizygotic twins are concordant for CD, and 0–2% are concordant for 
UC in Swedish and Danish cohorts. In the remainder of patients, IBD 
is observed in the absence of a family history (i.e., sporadic disease).
GLOBAL CONSIDERATIONS: 

IBD PHENOTYPES
IBD location and behavior show racial differences that may reflect 
underlying genetic variations and have important implications for 
diagnosis and management of disease. Blacks and Latinxs tend to 
have an ileocolonic CD distribution. Data from East Asia show that 
Monogenic
Oligogenic
Polygenic
Environment
Undiagnosed
infections?
Early onset
Genetics
Familial
(10%)
Sporadic
FIGURE 337-2  A model for the syndromic nature of inflammatory bowel disease 
(IBD). Genetic and environmental factors variably influence the development and 
phenotypic manifestations of IBD. At the one extreme, IBD is exemplified as a simple 
Mendelian disorder as observed in early-onset IBD due to single-gene defects such 
as IL10, IL10RA, and IL10RB; and at the other extreme, it may be exemplified by as yet 
to be described emerging infectious diseases. (Reproduced with permission from A 
Kaser et al: Genes and environment: How will our concepts on the pathophysiology 
of IBD develop in the future? Dig Dis 28:395, 2010.)

ileocolonic CD is the most common CD phenotype (50.5–71%) and 
perianal disease is more common in East Asian patients (30.3–58.8%) 
than Whites (25.1–29.6%). Pancolonic disease is more common than 
left-sided colitis or proctitis among Black, Latinx, and Asian patients 
with UC. Older Asian patients with UC (age >60) tend to have a more 
aggressive disease course. Among Blacks, joint involvement is the 
predominant extraintestinal manifestation (EIM) reported and ranges 
from 15.7 to 29.6%. Ocular involvement is also common in African 
Americans and ranges from 7.1 to 13%. Dermatologic manifestations 
are the most common EIMs reported in Latinxs (10–13%). These 
ethnic variations indicate the importance of different genetic and/or 
environmental factors in the pathogenesis of this disorder.
ETIOLOGY AND PATHOGENESIS
Under physiologic conditions, homeostasis normally exists between 
the commensal microbiota, epithelial cells that line the interior of the 
intestines (intestinal epithelial cells [IECs]), and immune cells within 
the tissues (Fig. 337-1). A consensus hypothesis is that each of these 
three major host compartments that function together as an integrated 
“supraorganism” (microbiota, IECs, and immune cells) are affected 
by specific environmental (e.g., smoking, antibiotics, enteropatho­
gens) and genetic factors that, in a susceptible host, cumulatively and 
interactively disrupt homeostasis during the course of one’s life and, in 
so doing, culminate in a chronic state of dysregulated inflammation; 
i.e., IBD. Although chronic activation of the mucosal immune system 
may represent an appropriate response to an infectious agent, a search 
for such an agent has thus far been unrewarding in IBD. As such, IBD is 
currently considered an inappropriate immune response to the endog­
enous (autochthonous) commensal microbiota within the intestines, 
with or without some component of autoimmunity. Importantly, the 
normal, uninflamed intestines contain a large number of immune cells 
that are in a unique state of activation, in which the gut is restrained 
from full immunologic responses to the commensal microbiota and 
dietary antigens by very powerful regulatory pathways that function 
within the immune system (e.g., T regulatory cells that express the 
FoxP3 transcription factor and suppress inflammation). Maintenance 
of homeostasis also involves oversight from local parenchymal cells 
including nerve, endothelial, and stromal cells, as well as the com­
mensal microbiota that provide essential remedial factors necessary for 
health and serve as a target of the immune response. During the course 
of infections or other environmental stimuli in the normal host, full 
activation of the lymphoid tissues in the intestines occurs but is rapidly 
superseded by dampening of the immune response and tissue repair. In 
IBD, such processes may not be regulated normally.
GENETIC CONSIDERATIONS
The genetic underpinning of IBD is known from its concordance 
in identical twins, its occurrence in the context of several genetic 
syndromes, and the development of severe, refractory IBD in 
early life in association with single-gene defects that affect the immune 
system (Table 337-2). More than 60 different gene defects have been 
identified in patients with VEOIBD and infantile IBD by whole-exome 
sequencing (WES), in whom most of the monogenic mutations have 
been discovered. These include mutations in genes encoding, for 
example, interleukin (IL) 10, the IL-10 receptor (IL-10R), cytotoxic 
T-lymphocyte-associated protein-4 (CTLA4), neutrophil cytosolic fac­
tor 2 protein (NCF2), X-linked inhibitor of apoptosis protein (XIAP), 
lipopolysaccharide responsive and beige-like anchor protein (LRBA), 
and tetratricopeptide repeat domain 7A protein (TTC7), among many 
other genes that are involved in host-commensal interactions. A mono­
genic etiology may also be possible in a small subset of adult patients 
with IBD. In addition, IBD has a familial origin in at least 10% of 
afflicted adults, consistent with an inherited basis for this disease (Fig. 
337-2). However, the majority of pediatric and adult IBD cases are 
multigenic (or polygenic) in origin, suggesting a syndromic nature of 
this disease that gives rise to multiple clinical subgroups beyond the 
simple classification as UC and CD. The polygenic nature of the disease 
has been elucidated through a variety of genetic approaches, including 
candidate gene studies, linkage analysis, and genome-wide association 

TABLE 337-2  Primary Genetic Disorders Associated with IBD
NAME
GENETIC ASSOCIATION
PHENOTYPE
Turner’s syndrome
Loss of part or all of X 
chromosome
Associated with UC and 
colonic CD
Hermansky-Pudlak 
syndrome
Autosomal recessive 
disorder genes involved in 
the biogenesis of lysosomerelated organelles or 
adaptor protein-3 complex
Granulomatous colitis, 
oculocutaneous albinism, 
platelet dysfunction, and 
pulmonary fibrosis
Wiskott-Aldrich 
syndrome (WAS)
X-linked recessive disorder, 
loss of WAS protein 
function
Colitis, immunodeficiency, 
severely dysfunctional 
platelets, and 
thrombocytopenia
Glycogen storage 
disease type 1b
Autosomal recessive 
disorder of SLC37A4 
resulting in deficiency of 
the glucose-6-phosphate 
translocase
Granulomatous colitis, 
presents in infancy with 
hypoglycemia, growth 
failure, hepatomegaly, and 
neutropenia
Immune dysregulation 
polyendocrinopathy, 
enteropathy X-linked 
(IPEX)
Loss of FoxP3 transcription 
factor and T regulatory cell 
function
UC-like autoimmune 
enteropathy, with 
endocrinopathy (neonatal 
type 1 diabetes or 
thyroiditis), dermatitis
Early-onset IBD
Deficient IL-10 and IL-10 
receptor function
Severe, refractory IBD in 
early life
Abbreviations: CD, Crohn’s disease; IBD, inflammatory bowel disease; IL, interleukin; 
UC, ulcerative colitis.
CHAPTER 337
studies (GWAS) that focus on the identification of disease-associated 
single nucleotide polymorphisms (SNPs) within the human genome 
and WES and whole-genome sequencing to elucidate the specific 
mutations potentially involved. GWAS have identified ~240 genetic 
loci with multiple potential candidate genes; two-thirds of these loci are 
associated with both disease phenotypes, with the remainder being 
specific for either CD or UC (Table 337-3). These genetic similarities 
account for the overlapping immunopathogenesis and consequently 
epidemiologic observations of both diseases in the same families and 
similarities in response to therapies. Because the specific causal vari­
ants for each identified gene or locus are mostly unknown as most risk 
loci are contained within regulatory (noncoding) regions of the associ­
ated genes, it is not clear whether the similarities in the genetic risk 
factors associated with CD and UC are shared at a structural or func­
tional level. The risk conferred by each identified gene or locus is 
unequal and generally small, such that only ~20% of the disease risk is 
considered to be explained by the current genetic information. Further, 
many of the genetic risk factors identified are also observed to be asso­
ciated with risk for other immune-mediated diseases, suggesting that 
related immunogenetic pathways are involved in the pathogenesis of 
multiple different disorders, accounting for the common responsive­
ness to similar types of biologic therapies (e.g., anti–tumor necrosis 
factor [TNF] therapies) and possibly the simultaneous occurrence of 
these disorders. The diseases and the genetic risk factors that are shared 
with IBD include, for example, rheumatoid arthritis (TNFAIP3), pso­
riasis (IL23R, IL12B), ankylosing spondylitis (IL23R), type 1 diabetes 
mellitus (IL10, PTPN2), asthma (ORMDL3), and systemic lupus ery­
thematosus (TNFAIP3, IL10), among others.
Inflammatory Bowel Disease 
The genetic factors that are recognized to mediate risk for IBD 
have highlighted the importance of shared mechanisms of disease that 
variably affect CD and/or UC (Table 337-3). These include the fol­
lowing: those genes that are associated with fundamental cell biologic 
processes such as the unfolded protein response due to endoplasmic 
reticulum stress, autophagy, and metabolism that regulate the ability 
of cells to manage the physiologic needs of the intestinal environment; 
those associated with innate immunity associated with nonlymphoid 
cells that function in responses to and control of microbes; those 
associated with the regulation of adaptive immunity that control the 
balance between inflammatory and anti-inflammatory cellular path­
ways associated with lymphocytes; and, finally, those that are involved 
in the development and resolution of inflammation associated with

PART 10
Disorders of the Gastrointestinal System
TABLE 337-3  Some Genetic Loci Associated with Crohn’s Disease and/or Ulcerative Colitis
CHROMOSOME
PUTATIVE 
GENE
GENE NAME
PROTEIN FUNCTION
CD
UC
Unfolded Protein Response, Autophagy, and Metabolism
2q37
ATG16L1
ATG16 autophagy related 16-like 1
Autophagy
+
5q31
SLC22A5
Solute carrier family 22, member 5
b-Carnitine transporter
+
5q33
IRGM
Immunity-related GTPase family, M
Autophagy
+
7p21
AGR2
Anterior gradient 2
Unfolded protein response
+
+
12q12
LRRK2
Leucine-rich repeat kinase 2
Autophagy
+
13q14
LACC1
Laccase domain containing 1 (FAMIN)
Immunometabolic regulator
+
17q21
ORMDL3
Orosomucoid related member 1-like 3
Unfolded protein response and lipid synthesis
+
+
22q12
XBP1
X-box binding protein 1
Unfolded protein response
+
+
Innate Immunity
1q23
ITLN1
Intelectin 1
Bacterial binding
+
16q12
NOD2
Nucleotide-binding oligomerization domain containing 2
Bacterial sensing and autophagy activation
+
Adaptive Immunity
1p31
IL23R
Interleukin 23 receptor
TH17 cell stimulation
+
+
1q32
IL10
Interleukin 10
Treg-associated cytokine
+
5q33
IL12B
Interleukin 12 subunit beta
IL-12 p40 chain of IL-12/IL-23
+
+
18p11
PTPN2
Protein tyrosine phosphatase, nonreceptor type 2
T-cell regulation
+
Inflammation and Healing
3p21
MST1
Macrophage Stimulating 1
Macrophage activation
+
+
5p13
PTGER4
Prostaglandin E receptor 4
PGE2 receptor
+
+
6q23
TNFAIP3
Tumor necrosis factor, alpha-induced protein 3 (A20)
Toll-like receptor regulation
+
6q27
CCR6
Chemokine (C-C motif) receptor 6
Dendritic cell migration
+
9p24
JAK2
Janus kinase 2
IL-6R and IL-23R signaling
+
+
9q32
TNFSF15
Tumor necrosis factor–like cytokine 1A (TL1A)
Promotes inflammation and fibrosis
+
+
17q21
STAT3
Signal transducer and activator of transcription 3
IL-6R, IL-23R, and IL-10R signaling
+
+
Abbreviations: CD, Crohn’s disease; GTPase, guanosine triphosphatase; IL, interleukin; PGE2, prostaglandin E2; Treg, T regulatory cell; UC, ulcerative colitis.
Source: Adapted from A Kaser et al: Ann Rev Immunol 28:573, 2010; Graham DB, Xavier RJ: Nature 578:527, 2020.
healing that control leukocyte recruitment and inflammatory media­
tor production or the development of fibrosis. Each of these genetic 
susceptibilities contributes in an incremental manner to IBD risk, 
variably affects the activities of virtually all subtypes of immune and 
nonimmune cells within the intestines, and encodes mutations (poly­
morphisms) that promote or protect from IBD. Some of these loci are 
associated with specific subtypes of disease such as the association 
between NOD2 polymorphisms and fibrostenosing CD or ATG16L1 
and fistulizing disease, especially within the ileum. However, the clini­
cal utility of these genetic risk factors for the diagnosis or determina­
tion of prognosis and therapeutic responses remains to be defined.
■
■COMMENSAL MICROBIOTA AND IBD
The endogenous commensal microbiota within the intestines plays a 
central role in the pathogenesis of IBD. Humans are born with sterile 
guts and acquire their commensal microbiota initially from the mother 
during egress through the birth canal and subsequently from environ­
mental sources. A stable configuration of up to 1000 species of bacteria 
that achieves a biomass of ~1012 colony-forming units per gram of feces 
is achieved by 3 years of age, which likely persists into adult life, with 
each individual human possessing a unique combination of species. 
In addition, the intestines contain other microbial life forms including 
fungi, archaea, viruses, and protists. The microbiota is thus considered 
as a critical and sustaining component of the human organism. The 
establishment and maintenance of the intestinal microbiota compo­
sition and function are under the control of host (e.g., immune and 
epithelial responses), environmental (e.g., diet and antibiotics), and 
likely genetic (e.g., NOD2) factors (Fig. 337-1). In turn, the microbiota, 
through its structural components and metabolic activity, has major 
influences on the epithelial and immune function of the host, which, 
through epigenetic effects, may have durable consequences. During 
early life when the commensal microbiota is being established, these 
microbial effects on the host may be particularly important in deter­
mining later life risk for IBD. Specific components of the microbiota 
can promote or protect from disease. The commensal microbiota in 
patients with both UC and CD is demonstrably different from that of 
nonafflicted individuals, a state of dysbiosis suggesting the presence 
of microorganisms that drive disease (e.g., Proteobacteria such as 
enteroinvasive and adherent Escherichia coli) and to which the immune 
response is directed and/or the loss of microorganisms that hinder 
inflammation (e.g., Firmicutes such as Faecalibacterium prausnitzii). 
Many of the changes in the commensal microbiota occur as a conse­
quence of the inflammation and are thus potential secondary drivers 
of disease. In addition, agents that alter the intestinal microbiota such 
as metronidazole, ciprofloxacin, and elemental diets, may improve CD. 
CD may also respond to fecal diversion, demonstrating the ability of 
luminal contents to exacerbate disease.
■
■DEFECTIVE IMMUNE REGULATION IN IBD
The mucosal immune system does not normally elicit an inflammatory 
immune response to luminal contents due to oral (mucosal) tolerance. 
Administration of soluble antigens orally, rather than subcutaneously 
or intramuscularly, leads to antigen-specific control of the response 
and the host’s ability to tolerate the antigen. Multiple mechanisms are 
involved in the induction of oral tolerance and include deletion or 
anergy (nonresponsiveness) of antigen-reactive T cells or induction 
of CD4+ T cells that suppress gut inflammation (e.g., T regulatory 
cells expressing the FoxP3 transcription factor) and that secrete antiinflammatory cytokines such as IL-10, IL-35, and transforming growth 
factor β (TGF-β). Oral tolerance may be responsible for the lack of 
immune responsiveness to dietary antigens and the commensal micro­
biota in the intestinal lumen. In IBD, this suppression of inflammation 
is altered, leading to uncontrolled inflammation. The mechanisms of 
this regulated immune suppression are incompletely known.

Inflammatory Bowel Disease 

CHAPTER 337
Gene knockout (–/–) or transgenic (Tg) mouse models of IBD, includ­
ing those that are directed at genes associated with risk for the human 
disease, have revealed that deleting specific cytokines (e.g., IL-2, IL-10, 
TGF-β) or their receptors, deleting molecules associated with T-cell 
antigen recognition (e.g., T-cell antigen receptors), or interfering with 
IEC barrier function and the regulation of responses to commensal 
bacteria (e.g., mucus glycoproteins or nuclear factor-κB [NF-κB]) leads 
to spontaneous colitis or enteritis. In the majority of circumstances, 
intestinal inflammation in these animal models requires the presence 
of the commensal microbiota. However, in some cases, activation of 
certain elements of the intestinal immune system may be exacerbated 
by the absence of bacteria, resulting in severe colitis and emphasizing 
the presence of protective properties of the commensal microbiota. 
Thus, a variety of specific alterations in either the microbiota or host 
can lead to uncontrolled immune activation and inflammation directed 
at the intestines in mice. How these relate to human IBD remains to 
be defined, but they are consistent with inappropriate responses of the 
genetically susceptible host to the commensal microbiota.
■
■THE INFLAMMATORY CASCADE IN IBD
In both UC and CD, inflammation likely emerges from the genetic 
predisposition of the host in the context of yet-to-be-defined envi­
ronmental factors. Once initiated in IBD by abnormal innate immune 
sensing of bacteria by parenchymal cells (e.g., IECs) and hematopoietic 
cells (e.g., macrophages, dendritic cells), the immune inflammatory 
response is perpetuated by T-cell and B-cell activation when coupled 
together with inadequate regulatory pathways. A sequential cascade 
of inflammatory mediators extends the response, making each step 
a potential target for therapy. Inflammatory cytokines from innate 
immune cells such as IL-1, IL-6, IL-12, IL-23, and TNF have diverse 
effects on tissues. They promote fibrogenesis, collagen production, 
activation of tissue metalloproteinases, and/or the production of other 
inflammatory mediators; they also activate the coagulation cascade in 
local blood vessels (e.g., increased production of von Willebrand fac­
tor). These cytokines are normally produced in response to infection 
but are usually turned off or inhibited by cytokines such as IL-10 and 
TGF-β at the appropriate time to limit tissue damage. In IBD, their 
activity is not regulated, resulting in an imbalance between the proin­
flammatory and anti-inflammatory mediators. Some of these cytokines 
activate other inflammatory cells (macrophages and B cells), and others 
such as chemokines act indirectly to recruit other lymphocytes, inflam­
matory leukocytes, and mononuclear cells from the bloodstream into 
the gut through interactions between homing receptors on leukocytes 
(e.g., α4β7 integrin) and addressins on vascular endothelium (e.g., 
MadCAM1). Lymphocytes such as CD4+ T helper (TH) cells emerge 
from the lymph nodes under the influence of sphingosine-1-phosphate 
(S1P) gradients that act on S1P receptors (S1PR) expressed on the lym­
phocyte and endothelium. CD4+ TH cells that promote inflammation 
are of four major types, all of which may be associated with colitis in 
animal models and perhaps humans: TH1 cells (secrete IL-2, interferon 
[IFN] γ), TH2 cells (secrete IL-4, IL-5, IL-13), TH9 cells (secrete IL-9), 
and TH17 cells (secrete IL-17, IL-21, IL-22). TH17 cells may also provide 
protective functions. Innate immune-like cells (ILCs) that lack T-cell 
receptors are also present in intestines, polarize to the same functional 
fates, and may similarly participate in IBD. TH1 cells induce transmu­
ral granulomatous inflammation that resembles CD; TH2 cells and 
related natural killer T cells that secrete IL-4, IL-5, and IL-13 induce 
superficial mucosal inflammation resembling UC in animal models; 
TH9 cells promote allergic-like inflammation; and TH17 cells may be 
responsible for neutrophilic recruitment. Each of these T-cell subsets 
cross-regulates each other. The TH1 cytokine pathway is initiated by 
IL-12, a key cytokine in the pathogenesis of experimental models of 
mucosal inflammation. IL-4 and IL-23, together with IL-6 and TGF-β, 
induce TH2 and TH17 cells, respectively, and IL-23 inhibits the suppres­
sive function of regulatory T cells. Activated macrophages secrete TNF 
and IL-6. Cytokines produced by innate immune cells and lymphocytes 
exert their effects on target cells through cytokine-specific receptors, 
which precisely engage intracellular Janus kinases (JAK) 1, 2, and/or 3 
for transmission of intracellular activating signals.
These characteristics of the immune response in IBD explain the 
beneficial therapeutic effects of antibodies to block proinflammatory 
cytokines or the signaling by their receptors (e.g., anti-TNF, anti-IL-12, 
anti-IL-23, JAK inhibitors), molecules that antagonize the activity 
of S1PR-induced emigration of lymphocytes from the lymph nodes 
(ozanimod), or antibodies that impede leukocyte recruitment into the 
intestines (e.g., anti-α4β7). They also highlight the potential usefulness 
of cytokines that inhibit inflammation and promote regulatory T cells 
or promote intestinal barrier function (e.g., IL-10) in the treatment of 
IBD. Therapies such as the 5-aminosalicylic acid (5-ASA) compounds 
and glucocorticoids are also potent inhibitors of these inflammatory 
mediators through inhibition of transcription factors such as NF-κB 
that regulate their expression.
PATHOLOGY
■
■ULCERATIVE COLITIS: MACROSCOPIC FEATURES
UC is a mucosal disease that usually involves the rectum and extends 
proximally to involve all or part of the colon. About 40–50% of patients 
have disease limited to the rectum and rectosigmoid, 30–40% have dis­
ease extending beyond the sigmoid but not involving the whole colon, 
and 20% have a pancolitis. Proximal spread occurs in continuity with­
out areas of uninvolved mucosa. When the whole colon is involved, 
the inflammation extends 2–3 cm into the terminal ileum in 10–20% 
of patients. The endoscopic changes of backwash ileitis are superficial 
and mild and are of little clinical significance. Although variations in 
macroscopic activity may suggest skip areas, biopsies from normalappearing mucosa are usually abnormal. Thus, it is important to obtain 
multiple biopsies from apparently uninvolved mucosa, whether proxi­
mal or distal, during endoscopy. One caveat is that effective medical 
therapy can change the appearance of the mucosa such that either skip 
areas or the entire colon can be microscopically normal.
With mild inflammation, the mucosa is erythematous and has a 
fine granular surface that resembles sandpaper. In more severe disease, 
the mucosa is hemorrhagic, edematous, and ulcerated (Fig. 337-3). In 
long-standing disease, inflammatory polyps (pseudopolyps) may be 
present as a result of epithelial regeneration. The mucosa may appear 
normal in remission, but in patients with many years of disease, it 
appears atrophic and featureless, and the entire colon becomes nar­
rowed and shortened. Patients with fulminant disease can develop a 
toxic colitis or megacolon where the bowel wall becomes thin and the 
mucosa is severely ulcerated; this may lead to perforation.
■
■ULCERATIVE COLITIS: MICROSCOPIC FEATURES
Histologic findings correlate well with the endoscopic appearance 
and clinical course of UC. The process is limited to the mucosa and 
FIGURE 337-3  Ulcerative colitis. Diffuse (nonsegmental) mucosal disease, 
with broad areas of ulceration. The bowel wall is not thickened, and there is no 
cobblestoning. (Courtesy of Dr. R. Odze, Division of Gastrointestinal Pathology, 
Department of Pathology, Brigham and Women’s Hospital, Boston, Massachusetts; 
with permission.)

FIGURE 337-4  Medium-power view of colonic mucosa in ulcerative colitis 
showing diffuse mixed inflammation, basal lymphoplasmacytosis, crypt atrophy and 
irregularity, and superficial erosion. These features are typical of chronic active 
ulcerative colitis. (Courtesy of Dr. R. Odze, Division of Gastrointestinal Pathology, 
Department of Pathology, Brigham and Women’s Hospital, Boston, Massachusetts; 
with permission.)
superficial submucosa, with deeper layers unaffected except in fulmi­
nant disease. In UC, two major histologic features suggest chronicity 
and help distinguish it from infectious or acute self-limited colitis. 
First, the crypt architecture of the colon is distorted; crypts may be 
bifid and reduced in number, often with a gap between the crypt bases 
and the muscularis mucosae. Second, some patients have basal plasma 
cells and multiple basal lymphoid aggregates. Mucosal vascular con­
gestion, with edema and focal hemorrhage, and an inflammatory cell 
infiltrate of neutrophils, lymphocytes, plasma cells, and macrophages 
may be present. The neutrophils invade the epithelium, usually in 
the crypts, giving rise to cryptitis and, ultimately, to crypt abscesses 
(Fig. 337-4). Ileal changes in patients with backwash ileitis include 
villous atrophy and crypt regeneration with increased inflammation, 
increased neutrophil and mononuclear inflammation in the lamina 
propria, and patchy cryptitis and crypt abscesses.
PART 10
Disorders of the Gastrointestinal System
■
■CROHN’S DISEASE: MACROSCOPIC FEATURES
CD can affect any part of the gastrointestinal (GI) tract from the mouth 
to the anus. Some 30–40% of patients have small-bowel disease alone, 
40–55% have disease involving both the small and large intestines, and 
15–25% have colitis alone. In the 75% of patients with small-intestinal 
disease, the terminal ileum is involved in 90%. Unlike UC, which 
almost always involves the rectum, the rectum is often spared in CD. 
CD is often segmental with skip areas throughout the diseased intes­
tine (Fig. 337-5). Perianal disease, manifesting as perirectal fistulas, 
fissures, abscesses, and anal stenosis, is present in one-third of patients 
with CD, particularly those with colonic involvement. Rarely, CD may 
also involve the liver and the pancreas.
Unlike UC, CD is a transmural process. Endoscopically, aphthous or 
small superficial ulcerations characterize mild disease; in more active dis­
ease, stellate ulcerations fuse longitudinally and transversely to demarcate 
islands of mucosa that frequently are histologically normal. This “cobble­
stone” appearance is characteristic of CD, both endoscopically and by 
barium radiography. As in UC, pseudopolyps can form in CD.
Active CD is characterized by focal inflammation and formation 
of fistula tracts, which resolve by fibrosis and stricturing of the bowel. 
The bowel wall thickens and becomes narrowed and fibrotic, leading 
to chronic, recurrent bowel obstructions. Projections of thickened 
mesentery known as “creeping fat” encase the bowel, and serosal and 
mesenteric inflammation promotes adhesions and fistula formation.
■
■CROHN’S DISEASE: MICROSCOPIC FEATURES
The earliest lesions are aphthoid ulcerations and focal crypt abscesses 
with loose aggregations of macrophages, which form noncaseating 

FIGURE 337-5  Crohn’s disease of the colon showing thickening of the wall, with 
stenosis, linear serpiginous ulcers, and cobblestoning of the mucosa. (Courtesy 
of Dr. R. Odze, Division of Gastrointestinal Pathology, Department of Pathology, 
Brigham and Women’s Hospital, Boston, Massachusetts; with permission.)
granulomas in all layers of the bowel wall (Fig. 337-6). Granulomas are 
a characteristic feature of CD and are less commonly found on muco­
sal biopsies than on surgical resection specimens. Other histologic 
features of CD include submucosal or subserosal lymphoid aggregates, 
particularly away from areas of ulceration, gross and microscopic skip 
areas, and transmural inflammation that is accompanied by fissures 
that penetrate deeply into the bowel wall and sometimes form fistulous 
tracts or local abscesses.
CLINICAL PRESENTATION
■
■ULCERATIVE COLITIS
Signs and Symptoms 
The major symptoms of UC are diarrhea, 
rectal bleeding, tenesmus, passage of mucus, and crampy abdominal 
pain. The severity of symptoms correlates with the extent of disease. 
Although UC can present acutely, symptoms usually have been present 
for weeks to months.
Patients with proctitis usually pass fresh blood or blood-stained 
mucus, either mixed with stool or streaked onto the surface of a normal 
or hard stool. They also have tenesmus, or urgency with a feeling of 
incomplete evacuation, but rarely have abdominal pain. With proctitis 
FIGURE 337-6  Medium-power view of Crohn’s colitis showing mixed acute and 
chronic inflammation, crypt atrophy, and multiple small epithelioid granulomas 
in the mucosa. (Courtesy of Dr. R. Odze, Division of Gastrointestinal Pathology, 
Department of Pathology, Brigham and Women’s Hospital, Boston, Massachusetts; 
with permission.)

TABLE 337-4  Montreal Classification of Extent and Severity of 
Ulcerative Colitis (UC)
EXTENT
ANATOMY
E1: Ulcerative proctitis
Involvement limited to the rectum
E2: Left-sided UC (distal UC)
Involvement limited to the colorectum distal to 
the splenic flexure
E3: Extensive UC (pancolitis)
Involvement extends proximal to the splenic 
flexure
SEVERITY
DEFINITION
S0: Clinical remission
Absence of symptoms
S1: Mild disease activity
≤4 stools/d (with or without blood), absence of 
systemic illness, normal inflammatory markers 
(ESR)
S2: Moderate disease activity ≥4 stools/d but minimal signs of systemic toxicity
S3: Severe disease activity
≥6 bloody stools/d, pulse ≥90 beats/min, 
temperature ≥37.5°C, hemoglobin <10.5 g/100 mL, 
and ESR ≥30 mm/h
Abbreviation: ESR, erythrocyte sedimentation rate.
Source: C Gasche et al: A simple classification of Crohn’s disease: Report of 
the Working Party for the World Congresses of Gastroenterology, Vienna 1998. 
Inflamm Bowel Dis 6:8, 2000; and J Satsangi et al: The Montreal classification 
of inflammatory bowel disease: Controversies, consensus, and implications. 
Gut 55:749, 2006.
or proctosigmoiditis, proximal transit slows, which may account for 
the constipation commonly seen in patients with distal disease.
When the disease extends beyond the rectum, blood is usually 
mixed with stool or grossly bloody diarrhea may be noted. Colonic 
motility is altered by inflammation with rapid transit through the 
inflamed intestine. When the disease is severe, patients pass a liquid 
stool containing blood, pus, and fecal matter. Diarrhea is often noc­
turnal and/or postprandial. Although severe pain is not a prominent 
symptom, some patients with active disease may experience lower 
abdominal discomfort or mild central abdominal cramping. Severe 
cramping and abdominal pain can occur with severe attacks of the dis­
ease. Other symptoms in moderate to severe disease include anorexia, 
nausea, vomiting, fever, and weight loss.
Physical signs of proctitis include a tender anal canal and blood 
on rectal examination. With more extensive disease, patients have 
tenderness to palpation directly over the colon. Patients with a toxic 
colitis have severe pain and bleeding, and those with megacolon have 
hepatic tympany. Both may have signs of peritonitis if a perforation has 
occurred. The classification of disease activity is shown in Table 337-4.
Laboratory, Endoscopic, and Radiographic Features 
Active 
disease can be associated with a rise in acute-phase reactants (C-reactive 
protein [CRP]), platelet count, and erythrocyte sedimentation rate 
(ESR) and a decrease in hemoglobin. Fecal lactoferrin, a glycoprotein 
present in activated neutrophils, is a highly sensitive and specific 
marker for detecting intestinal inflammation. Fecal calprotectin is 
present in neutrophils and monocytes, and the levels correlate well 
with histologic inflammation, predict relapses, and detect pouchitis. 
Both fecal lactoferrin and calprotectin are an integral part of IBD 
management and are used frequently to rule out active inflammation 
versus symptoms of irritable bowel or bacterial overgrowth. In severely 
ill patients, the serum albumin level will fall rather quickly. Leukocy­
tosis may be present but is not a specific indicator of disease activity. 
Diagnosis relies on the patient’s history, clinical symptoms, negative 
stool and/or tissue examination for bacteria, C. difficile toxin, ova and 
parasites, and viruses depending on epidemiologic considerations and 
clinical presentation; sigmoidoscopic appearance (see Fig. 333-4A); 
and histology of rectal or colonic biopsy specimens.
Sigmoidoscopy is used to assess disease activity and is usually per­
formed before treatment. If the patient is not having an acute flare, 
colonoscopy is used to assess disease extent and activity (Fig. 337-7). 
Endoscopically mild disease is characterized by erythema, decreased 
vascular pattern, and mild friability. Moderate disease is characterized 
by marked erythema, absent vascular pattern, friability, and erosions, 

FIGURE 337-7  Colonoscopy with acute ulcerative colitis: severe colon 
inflammation with erythema, friability, and exudates. (Courtesy of Dr. M. Hamilton, 
Gastroenterology Division, Department of Medicine, Brigham and Women’s 
Hospital, Boston, Massachusetts; with permission.)
and severe disease is characterized by spontaneous bleeding and ulcer­
ations. Histologic features change more slowly than clinical features 
but can also be used to grade disease activity. Intestinal ultrasound is 
a newer tool to assess UC activity and mucosal healing and correlates 
well with endoscopy and inflammatory markers.
CHAPTER 337
Complications 
Only 15% of patients with UC present initially 
with severe disease. Massive hemorrhage occurs in 1% of patients, and 
treatment for the disease usually stops the bleeding. Toxic megacolon is 
defined as a transverse or right colon with a diameter of >6 cm, with 
loss of haustration in patients with severe attacks of UC. It occurs rarely 
and can be triggered by electrolyte abnormalities and narcotics. About 
50% of acute dilations will resolve with conservative management 
alone, but urgent colectomy is required for those who do not improve. 
Perforation is the most dangerous of the local complications, and the 
physical signs of peritonitis may not be obvious, especially if the patient 
is receiving glucocorticoids. Although perforation is rare, the mortality 
rate for perforation complicating a toxic megacolon is ~15%. In addi­
tion, patients can develop a toxic colitis and such severe ulcerations 
that the bowel may perforate without first dilating.
Inflammatory Bowel Disease 
Strictures occur in ~5% of patients and are always a concern in UC 
because of the possibility of underlying neoplasia. Although benign 
strictures can form from the inflammation and fibrosis of UC, stric­
tures that are impassable with the colonoscope should be presumed 
malignant until proven otherwise. A stricture that prevents passage 
of the colonoscope is an indication for surgery. UC patients occasion­
ally develop anal fissures, perianal abscesses, or hemorrhoids, but the 
occurrence of extensive perianal lesions should suggest CD.
■
■CROHN’S DISEASE
Signs and Symptoms 
Although CD usually presents as acute or 
chronic bowel inflammation, the inflammatory process evolves toward 
one of two patterns of disease: a fibrostenotic obstructing pattern or 
a penetrating fistulous pattern, each with different treatments and 
prognoses. The site of disease influences the clinical manifestations 
(Table 337-5).
ILEOCOLITIS  Because the most common site of inflammation is the 
terminal ileum, the usual presentation of ileocolitis is a chronic his­
tory of recurrent episodes of right lower quadrant pain and diarrhea. 
Sometimes the initial presentation mimics acute appendicitis with 
pronounced right lower quadrant pain, a palpable mass, fever, and 
leukocytosis. Pain is usually colicky; it precedes and is relieved by def­
ecation. A low-grade fever is usually noted. High-spiking fever suggests 
intraabdominal abscess formation. Weight loss is common—typically

TABLE 337-5  Vienna and Montreal Classifications of Crohn’s Disease
 
VIENNA
MONTREAL
Age at diagnosis
A1: <40 years
A2: >40 years
A1: <16 years
A2: Between 17 and 40 years
A3: >40 years
Location
L1: Ileal
L2: Colonic
L3: Ileocolonic
L4: Upper
L1: Ileal
L2: Colonic
L3: Ileocolonic
L4: Isolated upper diseasea
Behavior
B1: Nonstricturing, 
nonpenetrating
B2: Stricturing
B3: Penetrating
B1: Nonstricturing, 
nonpenetrating
B2: Stricturing
B3: Penetrating
p: Perianal disease modifierb
aL4 is a modifier and can be added to L1–L3 when there is concomitant foregut 
disease. bp is added to B1–B3 when there is concomitant perianal disease.
10–20% of body weight—and develops as a consequence of diarrhea, 
anorexia, and fear of eating.
An inflammatory mass may be palpated in the right lower quadrant 
of the abdomen. The mass is composed of inflamed bowel, induration of 
the mesentery, and enlarged abdominal lymph nodes. The “string sign” 
on radiographic studies results from a severely narrowed loop of bowel, 
which makes the lumen resemble a frayed cotton string. It is caused by 
incomplete filling of the lumen as the result of edema, irritability, and 
spasms associated with inflammation and ulcerations. The sign may be 
seen in both nonstenotic and stenotic phases of the disease.
PART 10
Disorders of the Gastrointestinal System
Bowel obstruction may take several forms. In the early stages of 
disease, bowel wall edema and spasm produce intermittent obstructive 
manifestations and increasing symptoms of postprandial pain. Over 
several years, persistent inflammation gradually progresses to fibroste­
notic narrowing and stricture. Diarrhea will decrease and be replaced 
by chronic bowel obstruction. Acute episodes of obstruction occur as 
well, precipitated by bowel inflammation and spasm or sometimes by 
impaction of undigested food or medication. These episodes usually 
resolve with intravenous fluids and gastric decompression.
Severe inflammation of the ileocecal region may lead to localized 
wall thinning, with microperforation and fistula formation to the 
adjacent bowel, the skin, or the urinary bladder, or to an abscess cav­
ity in the mesentery. Enterovesical fistulas typically present as dysuria 
or recurrent bladder infections or, less commonly, as pneumaturia 
or fecaluria. Enterocutaneous fistulas follow tissue planes of least 
resistance, usually draining through abdominal surgical scars. Entero­
vaginal fistulas are rare and present as dyspareunia or as a feculent or 
foul-smelling, often painful vaginal discharge. They are unlikely to 
develop without a prior hysterectomy.
JEJUNOILEITIS  Extensive inflammatory disease is associated with a 
loss of digestive and absorptive surface, resulting in malabsorption and 
steatorrhea. Nutritional deficiencies can also result from poor intake 
and enteric losses of protein and other nutrients. Intestinal malab­
sorption can cause anemia, hypoalbuminemia, hypocalcemia, hypo­
magnesemia, coagulopathy, and hyperoxaluria with nephrolithiasis in 
patients with an intact colon. Many patients need to take intravenous 
iron since oral iron is poorly tolerated and often ineffective. Verte­
bral fractures are caused by a combination of vitamin D deficiency, 
hypocalcemia, and prolonged glucocorticoid use. Pellagra from niacin 
deficiency can occur in extensive small-bowel disease, and malabsorp­
tion of vitamin B12 can lead to megaloblastic anemia and neurologic 
symptoms. Other important nutrients to measure and replete if low are 
folate and vitamins A, E, and K. Levels of minerals such as zinc, sele­
nium, copper, and magnesium are often low in patients with extensive 
small-bowel inflammation or resections, and these should be repleted 
as well. Most patients should take daily multivitamin, calcium, and 
vitamin D supplements.
Diarrhea is characteristic of active disease; its causes include (1) 
bacterial overgrowth in obstructive stasis or fistulization, (2) bile acid 

malabsorption due to a diseased or resected terminal ileum, (3) intes­
tinal inflammation with decreased water absorption and increased 
secretion of electrolytes, and (4) enteroenteric fistula(e).
COLITIS AND PERIANAL DISEASE  Patients with colitis present with 
low-grade fevers, malaise, diarrhea, crampy abdominal pain, and 
sometimes hematochezia. Gross bleeding is not as common as in UC 
and appears in about one-half of patients with exclusively colonic dis­
ease. Only 1–2% exhibit massive bleeding. Pain is caused by passage of 
fecal material through narrowed and inflamed segments of the large 
bowel. Decreased rectal compliance is another cause for diarrhea in 
Crohn’s colitis patients.
Stricturing can occur in the colon in 4–16% of patients and produce 
symptoms of bowel obstruction. If the endoscopist is unable to traverse 
a stricture in Crohn’s colitis, surgical resection should be considered, 
especially if the patient has symptoms of chronic obstruction. Colonic 
disease may fistulize into the stomach or duodenum, causing feculent 
vomiting, or to the proximal or mid-small bowel, causing malab­
sorption by “short circuiting” the absorptive surface and bacterial 
overgrowth. Ten percent of women with Crohn’s colitis will develop a 
rectovaginal fistula.
Perianal disease affects about one-third of patients with Crohn’s colitis 
and is manifested by incontinence, large hemorrhoidal tags, anal stric­
tures, anorectal fistulas, and perirectal abscesses. Not all patients with 
perianal fistula will have endoscopic evidence of colonic inflammation.
GASTRODUODENAL DISEASE  Symptoms and signs of upper GI tract 
disease include nausea, vomiting, and epigastric pain. Patients usually 
have a Helicobacter pylori–negative gastritis. The second portion of the 
duodenum is more commonly involved than the bulb. Fistulas involv­
ing the stomach or duodenum arise from the small or large bowel and 
do not necessarily signify the presence of upper GI tract involvement. 
Patients with advanced gastroduodenal CD may develop a chronic gas­
tric outlet obstruction. About 30% of children diagnosed with CD have 
esophagogastroduodenal involvement. The classification of disease 
activity is shown in Table 337-5.
Laboratory, Endoscopic, and Radiographic Features 
Laboratory 
abnormalities include elevated ESR and CRP. In more severe disease, find­
ings include hypoalbuminemia, anemia, and leukocytosis. Fecal calprotec­
tin and lactoferrin levels have been used to distinguish IBD from irritable 
bowel syndrome (IBS), to assess whether CD is active, and to detect post­
operative recurrence of CD. Fecal calprotectin is a more sensitive marker of 
ileocolonic or colonic inflammation rather than isolated ileal inflammation.
Endoscopic features of CD include rectal sparing, aphthous ulcer­
ations, fistulas, and skip lesions. Colonoscopy allows examination and 
biopsy of mass lesions or strictures and biopsy of the terminal ileum. 
Upper endoscopy is useful in diagnosing gastroduodenal involvement 
in patients with upper tract symptoms. An ileal or colonic stricture may 
be dilated with a balloon introduced through the colonoscope. Strictures 
≤4 cm in length and those at anastomotic sites respond better to endo­
scopic dilation. The perforation rate is as high as 10%. Most endoscopists 
dilate only fibrotic strictures and not those associated with active inflam­
mation. Wireless capsule endoscopy (WCE) allows direct visualization 
of the entire small-bowel mucosa (Fig. 337-8). The diagnostic yield 
of detecting lesions suggestive of active CD is higher with WCE than 
computed tomography (CT) or magnetic resonance (MR) enterography. 
WCE should not be used in the setting of a small-bowel stricture. Cap­
sule retention occurs in <1% of patients with suspected CD, but retention 
rates of 4–6% are seen in patients with established CD. It is helpful to 
give the patient with CD a patency capsule, which is made of barium and 
starts to dissolve 30 h after ingestion. An abdominal x-ray can be taken 
at around 30 h after ingestion to see if the capsule is still present in the 
small bowel, which would indicate a stricture.
In CD, early radiographic findings in the small bowel include 
thickened folds and aphthous ulcerations. “Cobblestoning” from lon­
gitudinal and transverse ulcerations most frequently involves the small 
bowel. In more advanced disease, strictures, fistulas, inflammatory 
masses, and abscesses may be detected. The earliest macroscopic find­
ings of colonic CD are aphthous ulcers. These small ulcers are often

FIGURE 337-8  Wireless capsule endoscopy image in a patient with Crohn’s disease 
of the ileum shows ulcerations and narrowing of the intestinal lumen. (Courtesy 
of Dr. S. Reddy, Gastroenterology Division, Department of Medicine, Brigham and 
Women’s Hospital, Boston, Massachusetts; with permission.)
multiple and separated by normal intervening mucosa. As the disease 
progresses, aphthous ulcers become enlarged, deeper, and occasionally 
connected to one another, forming longitudinal stellate, serpiginous, 
and linear ulcers (see Fig. 333-4B).
The transmural inflammation of CD leads to decreased luminal 
diameter and limited distensibility. As ulcers progress deeper, they can 
lead to fistula formation. The segmental nature of CD results in wide 
gaps of normal or dilated bowel between involved segments.
CT enterography and MR enterography have been shown to be 
equally accurate in the identification of active small-bowel inflamma­
tion. MRI is thought to offer superior soft tissue contrast and has the 
added advantage of avoiding radiation exposure changes (Figs. 337-9 
and 337-10). The lack of ionizing radiation is particularly appealing 
in younger patients and when monitoring response to therapy where 
serial images will be obtained. Pelvic MRI is superior to pelvic CT 
for demonstrating pelvic lesions such as ischiorectal abscesses and 
perianal fistulas (Fig. 337-11). An underutilized resource for assessing 
small-bowel CD is small-bowel ultrasound (SBUS). SBUS is at least 
as sensitive as MR enterography and CT enterography for detecting 
small-bowel CD, with a sensitivity of 94%, specificity of 97%, positive 
predictive value of 97%, and negative predictive value of 94%. Use of 
oral contrast medium can increase the sensitivity and specificity to 
detect small-bowel lesions to 100%. SBUS is best suited for distal smallbowel assessment, as the sensitivity of detecting lesions within the duo­
denum and proximal jejunum may be lower due to anatomic position. 
The limitations of SBUS include availability and operator dependence.
Complications 
Because CD is a transmural process, serosal adhe­
sions develop that provide direct pathways for fistula formation and 
reduce the incidence of free perforation. Perforation occurs in 1–2% 
of patients, usually in the ileum but occasionally in the jejunum or 
as a complication of toxic megacolon. The peritonitis of free perfo­
ration, especially colonic, may be fatal. Intraabdominal and pelvic 
abscesses occur in 10–30% of patients with CD at some time in the 
course of their illness. CT-guided percutaneous drainage of the abscess 
is standard therapy. Despite adequate drainage, most patients need 
resection of the offending bowel segment. Percutaneous drainage has 
an especially high failure rate in abdominal wall abscesses. Systemic 
glucocorticoid therapy increases the risk of intraabdominal and pelvic 

FIGURE 337-9  A coronal magnetic resonance image was obtained using a half 
Fourier single-shot T2-weighted acquisition with fat saturation in a 27-year-old 
pregnant (23 weeks’ gestation) woman. The patient had Crohn’s disease and was 
maintained on mercaptopurine and prednisone. She presented with abdominal pain, 
distension, vomiting, and small-bowel obstruction. The image reveals a 7- to 10-cm 
long stricture at the terminal ileum (white arrows) causing obstruction and significant 
dilatation of the proximal small bowel (white asterisk). A fetus is seen in the uterus 
(dashed white arrows). (Courtesy of Drs. J. F. B. Chick and P. B. Shyn, Abdominal 
Imaging and Intervention, Department of Radiology, Brigham and Women’s Hospital, 
Harvard Medical School, Boston, Massachusetts; with permission.)
CHAPTER 337
Inflammatory Bowel Disease 
abscesses in CD patients who have never had an operation. Other com­
plications include intestinal obstruction in 40%, massive hemorrhage, 
malabsorption, and severe perianal disease.
Serologic Markers 
Clinical factors described at diagnosis are 
more helpful than serologies at predicting the natural history of IBD. 
The positive and negative predictive values of serologic tests such 
as anti-Saccharomyces cerevisiae antibody (ASCA) and perinuclear 
antineutrophil cytoplasmic antibody (pANCA) vary depending on 
the prevalence of IBD in different populations, such that their clinical 
usefulness is unclear.
DIFFERENTIAL DIAGNOSIS OF UC AND CD
Once a diagnosis of IBD is made, distinguishing between UC and 
CD is impossible initially in up to 15% of cases. These are termed 
indeterminate colitis. Fortunately, in most cases, the true nature of the 
underlying colitis becomes evident later in the course of the patient’s 
disease. Approximately 5% of colon resection specimens are difficult to 
classify as either UC or CD because they exhibit overlapping histologic 
features.
■
■INFECTIOUS DISEASES
Infections of the small intestines and colon can mimic CD or UC. They 
may be bacterial, fungal, viral, or protozoal in origin (Table 337-6). 
Campylobacter colitis can mimic the endoscopic appearance of severe 
UC and can cause a relapse of established UC. Salmonella can cause 
watery or bloody diarrhea, nausea, and vomiting. Shigellosis causes 
watery diarrhea, abdominal pain, and fever followed by rectal tenesmus 
and by the passage of blood and mucus per rectum. All three are usu­
ally self-limited, but 1% of patients infected with Salmonella become 
asymptomatic carriers. Yersinia enterocolitica infection occurs mainly 
in the terminal ileum and causes mucosal ulceration, neutrophil

FIGURE 337-10  A coronal balanced, steady-state, free precession, T2-weighted 
image with fat saturation was obtained in a 32-year-old man with Crohn’s disease 
and prior episodes of bowel obstruction, fistulas, and abscesses. He was being 
treated with mercaptopurine and presented with abdominal distention and diarrhea. 
The image demonstrates a new gastrocolic fistula (solid white arrows). Multifocal 
involvement of the small bowel and terminal ileum is also present (dashed white 
arrows). (Courtesy of Drs. J. F. B. Chick and P. B. Shyn, Abdominal Imaging and 
Intervention, Department of Radiology, Brigham and Women’s Hospital, Harvard 
Medical School, Boston, Massachusetts; with permission.)
PART 10
Disorders of the Gastrointestinal System
FIGURE 337-11  Axial T2-weighted fat-saturated image obtained in a 39-year-old 
male with Crohn’s disease shows a defect in the internal sphincter at the 6 o’clock 
position of the mid anal canal (open white arrow) communicating with a 1.1-cm 
intersphincteric collection (black arrow). Wide defect in the external sphincter at the 
7 o’clock position (solid white arrow) leads to a moderate-sized perianal abscess in 
the ischioanal fossa (asterisk). (Courtesy of Drs. J.S. Quon and P.B. Shyn, Abdominal 
Imaging and Intervention, Department of Radiology, Brigham and Women’s Hospital, 
Harvard Medical School, Boston, Massachusetts; with permission.)

TABLE 337-6  Diseases That Mimic IBD
Infectious Etiologies
Bacterial
Mycobacterial
Viral
  Salmonella
  Tuberculosis
  Cytomegalovirus
  Shigella
  Mycobacterium avium
  Herpes simplex
  Toxigenic
Parasitic
  HIV
  Escherichia coli
  Amebiasis
Fungal
  Campylobacter
  Isospora
  Histoplasmosis
  Yersinia
  Trichuris trichiura
  Candida
  Clostridioides difficile
  Hookworm
  Aspergillus
  Gonorrhea
  Strongyloides
 
  Chlamydia trachomatis
 
Noninfectious Etiologies
Inflammatory
Neoplastic
Drugs and Chemicals
  Appendicitis
  Lymphoma
  NSAIDs
  Diverticulitis
  Metastatic
  Phosphosoda
  Diversion colitis
  Carcinoma
  Cathartic colon
  Collagenous/lymphocytic 
  Carcinoma of the ileum
  Carcinoid
  Familial polyposis
  Gold
  Oral contraceptives
  Cocaine
  Immune checkpoint 
colitis
  Ischemic colitis
  Radiation colitis/enteritis
inhibitor colitis
  Mycophenolate 
  Solitary rectal ulcer 
syndrome
mofetil
  Eosinophilic 
gastroenteritis
  Neutropenic colitis
  Behçet’s syndrome
  Graft-versus-host disease
Abbreviations: IBD, inflammatory bowel disease; NSAIDs, nonsteroidal antiinflammatory drugs.
invasion, and thickening of the ileal wall. Other bacterial infections 
that may mimic IBD include C. difficile, which presents with watery 
diarrhea, tenesmus, nausea, and vomiting; and E. coli, three categories 
of which can cause colitis. These are enterohemorrhagic, enteroinva­
sive, and enteroadherent E. coli, all of which can cause bloody diarrhea 
and abdominal tenderness. Gonorrhea, Chlamydia, and syphilis can 
also cause proctitis.
GI involvement with mycobacterial infection occurs primarily in 
the immunosuppressed patient but may occur in patients with nor­
mal immunity. Distal ileal and cecal involvement predominates, and 
patients present with symptoms of small-bowel obstruction and a ten­
der abdominal mass. The diagnosis is made most directly by colonos­
copy with biopsy and culture. Although most of the patients with viral 
colitis are immunosuppressed, cytomegalovirus (CMV) and herpes 
simplex proctitis may occur in immunocompetent individuals. CMV 
occurs most commonly in the esophagus, colon, and rectum but may 
also involve the small intestine. Symptoms include abdominal pain, 
bloody diarrhea, fever, and weight loss. With severe disease, necrosis 
and perforation can occur. Diagnosis is made by identification of char­
acteristic intranuclear inclusions in mucosal cells on biopsy. Herpes 
simplex infection of the GI tract is limited to the oropharynx, anorec­
tum, and perianal areas. Symptoms include anorectal pain, tenesmus, 
constipation, inguinal adenopathy, difficulty with urinary voiding, and 
sacral paresthesias. Diagnosis is made by rectal biopsy with identifica­
tion of characteristic cellular inclusions and viral culture. HIV itself 
can cause diarrhea, nausea, vomiting, and anorexia. Small-intestinal 
biopsies show partial villous atrophy; small-bowel bacterial overgrowth 
and fat malabsorption may also be noted.
Protozoan parasites include Isospora belli, which can cause a selflimited infection in healthy hosts but causes a chronic profuse, watery 
diarrhea and weight loss in AIDS patients. Entamoeba histolytica 
or related species infect ~10% of the world’s population; symptoms 
include abdominal pain, tenesmus, frequent loose stools containing

blood and mucus, and abdominal tenderness. Colonoscopy reveals 
focal punctate ulcers with normal intervening mucosa; diagnosis is 
made by biopsy or serum amebic antibodies. Fulminant amebic colitis 
is rare but has a mortality rate of >50%.
Other parasitic infections that may mimic IBD include hookworm 
(Necator americanus), whipworm (Trichuris trichiura), and Strongyloi­
des stercoralis. In severely immunocompromised patients, Candida or 
Aspergillus can be identified in the submucosa. Disseminated histoplas­
mosis can involve the ileocecal area.
■
■NONINFECTIOUS DISEASES
Diverticulitis can be confused with CD clinically and radiographically. 
Both diseases cause fever, abdominal pain, tender abdominal mass, leu­
kocytosis, elevated ESR, partial obstruction, and fistulas. Perianal disease 
or ileitis on small-bowel series favors the diagnosis of CD. Significant 
endoscopic mucosal abnormalities are more likely in CD than in diver­
ticulitis. Endoscopic or clinical recurrence following segmental resection 
favors CD. Diverticular-associated colitis is similar to CD, but mucosal 
abnormalities are limited to the sigmoid and descending colon.
Ischemic colitis is commonly confused with IBD. The ischemic 
process can be chronic and diffuse, as in UC, or segmental, as in CD. 
Colonic inflammation due to ischemia may resolve quickly or may per­
sist and result in transmural scarring and stricture formation. Ischemic 
bowel disease should be considered in the elderly following abdominal 
aortic aneurysm repair or when a patient has a hypercoagulable state or 
a severe cardiac or peripheral vascular disorder. Patients usually present 
with sudden onset of left lower quadrant pain, urgency to defecate, and 
the passage of bright red blood per rectum. Endoscopic examination 
often demonstrates a normal-appearing rectum and a sharp transition 
to an area of inflammation in the descending colon and splenic flexure.
The effects of radiotherapy on the GI tract can be difficult to distin­
guish from IBD. Acute symptoms can occur within 1–2 weeks of start­
ing radiotherapy. When the rectum and sigmoid are irradiated, patients 
develop bloody, mucoid diarrhea and tenesmus, as in distal UC. With 
small-bowel involvement, diarrhea is common. Late symptoms include 
malabsorption and weight loss. Stricturing with obstruction and bacte­
rial overgrowth may occur. Fistulas can penetrate the bladder, vagina, 
or abdominal wall. Flexible sigmoidoscopy reveals mucosal granularity, 
friability, numerous telangiectasias, and occasionally discrete ulcer­
ations. Biopsy can be diagnostic.
Solitary rectal ulcer syndrome is uncommon and can be con­
fused with IBD. It occurs in persons of all ages and may be caused 
by impaired evacuation and failure of relaxation of the puborectalis 
muscle. Single or multiple ulcerations may arise from anal sphincter 
overactivity, higher intrarectal pressures during defecation, and digital 
removal of stool. Patients complain of constipation with straining and 
pass blood and mucus per rectum. Other symptoms include abdominal 
pain, diarrhea, tenesmus, and perineal pain. Ulceration, which may be 
as large as 5 cm in diameter, is usually observed anteriorly or anterolat­
erally 3–15 cm from the anal verge. Biopsies can be diagnostic.
Several types of colitis are associated with nonsteroidal antiinflammatory drugs (NSAIDs), including de novo colitis, reactivation 
of IBD, and proctitis caused by use of suppositories. Most patients with 
NSAID-related colitis present with diarrhea and abdominal pain, and 
complications include stricture, bleeding, obstruction, perforation, 
and fistulization. Withdrawal of these agents is crucial, and in cases of 
reactivated IBD, standard therapies are indicated.
Colitis secondary to immune checkpoint inhibitors (ICIs), termed 
ICI-related colitis, has emerged as these agents have found use in a 
wide variety of cancers. Immune checkpoint proteins such as CTLA-4 
and programmed cell death protein 1 (PD-1) are receptors expressed 
on the surface of effector T cells that interact with their ligands CD80/
CD86 (CTLA-4) and programmed death ligand 1 (PD-L1) on antigenpresenting cells and normally function as inhibitors of immune 
responses. ICIs block these inhibitory pathways and promote the acti­
vation and proliferation of the native adaptive T-cell response against 
malignant cells as their mechanism of antitumor activity. While very 
effective at enhancing antitumor T-cell activity, ICIs also activate global 
T-cell responses that induce several autoimmune-related adverse 

events. Although immune-related adverse events of ICIs occur in mul­
tiple organ systems, the GI tract is affected in 21–44% of patients. The 
most common clinical presentation is self-limited diarrhea that can be 
associated with frank colitis and can lead to significant morbidity and 
mortality if not managed appropriately. Treatment is generally based 
on symptom severity. Moderate to severe symptoms usually require 
glucocorticoids, whereas biologics such as anti-TNF agents and integ­
rin inhibitors are used in steroid-refractory cases.

■
■THE ATYPICAL COLITIDES
Two atypical colitides—collagenous colitis and lymphocytic colitis—
have normal endoscopic appearances. Collagenous colitis has two main 
histologic components: increased subepithelial collagen deposition and 
colitis with increased intraepithelial lymphocytes. The female-to-male 
ratio is 9:1, and most patients present in the sixth or seventh decade of 
life. The main symptom is chronic watery diarrhea. Risk factors include 
smoking; use of NSAIDs, proton pump inhibitors, or beta blockers; and 
a history of autoimmune disease.
Lymphocytic colitis has features similar to collagenous colitis, includ­
ing age at onset and clinical presentation, but it has almost equal inci­
dence in men and women and no subepithelial collagen deposition on 
pathologic section. However, intraepithelial lymphocytes are increased. 
Use of sertraline (but not beta blockers) is an additional risk factor. The 
frequency of celiac disease is increased in lymphocytic colitis and ranges 
from 9 to 27%. Celiac disease should be excluded in all patients with 
lymphocytic colitis, particularly if diarrhea does not respond to conven­
tional therapy. Treatments for both microscopic colitides vary depending 
on symptom severity and include, antidiarrheals (e.g., loperamide and 
diphenoxylate), bismuth, aminosalicylates, budesonide, systemic gluco­
corticoids, and biologics for refractory disease.
CHAPTER 337
Diversion colitis is an inflammatory process that arises in segments 
of the large intestine that are not continuous with the fecal stream. It 
usually occurs in patients with ileostomy or colostomy when a mucus 
fistula or a Hartmann’s pouch has been created. Clinically, patients 
have mucus or bloody discharge from the rectum. Erythema, granu­
larity, friability, and, in more severe cases, ulceration can be seen on 
endoscopy. Histopathology shows areas of active inflammation with 
foci of cryptitis and crypt abscesses. Crypt architecture is normal, 
which differentiates it from UC but not necessarily CD. Short-chain 
fatty acid enemas may help in diversion colitis, but the definitive 
therapy is surgical reanastomosis.
Inflammatory Bowel Disease 
EXTRAINTESTINAL MANIFESTATIONS
Up to one-third of IBD patients have at least one extraintestinal disease 
manifestation. Please see Table 337-7 for a summary of IBD EIMs.
■
■DERMATOLOGIC
Erythema nodosum (EN) occurs in up to 15% of CD patients and 
10% of UC patients. Attacks usually correlate with bowel activity; 
skin lesions develop after the onset of bowel symptoms, and patients 
frequently have concomitant active peripheral arthritis. The lesions of 
EN are hot, red, tender nodules measuring 1–5 cm in diameter and are 
found on the anterior surface of the lower legs, ankles, calves, thighs, 
and arms. Therapy is directed toward the underlying bowel disease.
Pyoderma gangrenosum (PG) is seen in 1–12% of UC patients and 
less commonly in Crohn’s colitis. Although it usually presents after 
the diagnosis of IBD, PG may occur years before the onset of bowel 
symptoms, run a course independent of the bowel disease, respond 
poorly to colectomy, and even develop years after proctocolectomy. It 
is usually associated with severe disease. Lesions are commonly found 
on the dorsal surface of the feet and legs but may occur on the arms, 
chest, stoma, and even the face. PG usually begins as a pustule and 
then spreads concentrically to rapidly undermine healthy skin. Lesions 
then ulcerate, with violaceous edges surrounded by a margin of ery­
thema. Centrally, they contain necrotic tissue with blood and exudates. 
Lesions may be single or multiple and grow as large as 30 cm. They are 
sometimes very difficult to treat and often require IV antibiotics, IV 
glucocorticoids, dapsone, azathioprine, thalidomide, IV cyclosporine 
(CSA), infliximab, or adalimumab.

TABLE 337-7  Extraintestinal Manifestations
CATEGORY
CLINICAL COURSE
TREATMENT
Rheumatologic Disorders (5–20%)
Peripheral arthritis
Asymmetric, migratory
Parallels bowel activity
Sacroiliitis
Symmetric: spine and hip joints
Independent of bowel activity
Ankylosing spondylitis
Gradual fusion of spine
Independent of bowel activity
Two-thirds have HLA-B27 antigen
Metabolic Bone Disorders (up to 40% of patients)
Osteoporosis
Risk increased by glucocorticoids, cyclosporine, methotrexate, total 
parenteral nutrition, malabsorption, and inflammation
Fracture rates highest in the elderly (age >60)
Osteonecrosis
Death of osteocytes and adipocytes and eventual bone collapse; affects hips 
more than knees or shoulders; risk factor is steroid use
Dermatologic Disorders (10–20%)
Erythema nodosum
Hot, red, tender, nodules/extremities
Parallels bowel activity
Pyoderma gangrenosum
Ulcerating, necrotic lesions on extremities, trunk, face, stoma
Independent of bowel activity
Psoriasis
Unrelated to bowel activity
Topical steroids, light therapy, methotrexate, infliximab, 
adalimumab, ustekinumab, risankizumab, JAK inhibitors
Pyoderma vegetans
Intertriginous areas
Parallels bowel activity
PART 10
Disorders of the Gastrointestinal System
Pyostomatitis vegetans
Mucous membranes
Parallels bowel activity
Metastatic Crohn’s 
disease (CD)
CD of the skin
Parallels bowel activity
Sweet syndrome
Neutrophilic dermatosis
Parallels bowel activity
Aphthous stomatitis
Oral ulcerations
Parallels bowel activity
Ocular Disorders (1–11%)
Uveitis
Ocular pain, photophobia, blurred vision, headache
Independent of bowel activity
Episcleritis
Mild ocular burning
Parallels bowel activity
Hepatobiliary Disorders (10–35%)
Fatty liver
Secondary to chronic illness, malnutrition, steroid therapy
Improve nutrition, reduce steroids
Cholelithiasis
Patients with ileitis or ileal resection
Malabsorption of bile acids, depletion of bile salt pool, secretion of lithogenic bile
Primary sclerosing 
cholangitis (PSC)
Intrahepatic and extrahepatic
Inflammation and fibrosis leading to biliary cirrhosis and hepatic failure
7–10% cholangiocarcinoma
Small-duct PSC involves small-caliber bile ducts and has a better prognosis
Urologic
Nephrolithiasis (10–20%)
CD patients following small-bowel resection; calcium oxalate stones most 
common
Less Common Extraintestinal Manifestations
Thromboembolic disorders
Increased risk of venous and arterial thrombosis; factors responsible include 
abnormalities of the platelet-endothelial interaction, hyperhomocysteinemia, 
alterations in the coagulation cascade, impaired fibrinolysis, involvement of 
tissue factor–bearing microvesicles, disruption of the normal coagulation 
system by autoantibodies, and a genetic predisposition
Cardiopulmonary
Endocarditis, myocarditis, pleuropericarditis, interstitial lung disease
Treatment is varied; stop 5-ASA agents as they can rarely 
cause interstitial lung disease
Systemic amyloidosis
Secondary (reactive) in long-standing IBD, especially CD
Colchicine and referral to specialty center
Pancreatitis
Duodenal fistulas, ampullary CD, gallstones, PSC, drugs (MP, azathioprine, 
5-ASAs), autoimmune, primary CD of the pancreas
Abbreviations: 5-ASA, 5-aminosalicylic acid; DEXA, dual-energy x-ray absorptiometry; ERCP, endoscopic retrograde cholangiopancreatography; IBD, inflammatory bowel 
disease; IL, interleukin; MP, mercaptopurine; TNF, tumor necrosis factor.

Reduce bowel inflammation
Steroids, injections, methotrexate, anti-TNF
Physical therapy, steroids, injections, methotrexate, antiTNF, IL-17 inhibitors, JAK inhibitors
Screening with DEXA scan, check vitamin D levels, treat if 
osteoporosis or osteopenia on long-term corticosteroids
Pain control, injections, joint replacement
Reduce bowel inflammation
Antibiotics, steroids, cyclosporine, infliximab, dapsone, 
azathioprine, intralesional steroids; not debridement or 
colectomy
Evanescent; resolves without progression
Evanescent; resolves without progression
Reduce bowel inflammation
Reduce bowel inflammation
Reduce bowel inflammation/topical therapy
Topical or systemic steroids
Topical corticosteroids
Reduce bowel inflammation; cholecystectomy in 
symptomatic patients
Cholecystectomy in patients with gallbladder polyps due 
to the high incidence of malignancy
Low-oxalate diet; control of bowel inflammation; surgical 
intervention
Anticoagulation; control of inflammation
Treatment is varied; stop offending medication; diagnose 
and treat with ERCP and/or cholecystectomy

Other dermatologic manifestations include pyoderma vegetans, 
which occurs in intertriginous areas; pyostomatitis vegetans, which 
involves the mucous membranes; Sweet syndrome, a neutrophilic 
dermatosis; and metastatic CD, a rare disorder defined by cutaneous 
granuloma formation. Psoriasis affects 5–10% of patients with IBD 
and is unrelated to bowel activity, consistent with the potential shared 
immunogenetic basis of these diseases. Perianal skin tags are found in 
75–80% of patients with CD, especially those with colon involvement. 
Oral mucosal lesions, seen often in CD and rarely in UC, include aph­
thous stomatitis and “cobblestone” lesions of the buccal mucosa.
■
■RHEUMATOLOGIC
Peripheral arthritis develops in 15–20% of IBD patients, is more 
common in CD, and worsens with exacerbations of bowel activity. It 
is asymmetric, polyarticular, and migratory and most often affects 
large joints of the upper and lower extremities. Treatment is directed 
at reducing bowel inflammation. In severe UC, colectomy frequently 
cures the arthritis.
Ankylosing spondylitis (AS) occurs in ~10% of IBD patients and 
is more common in CD than UC. About two-thirds of IBD patients 
with AS express the HLA-B27 antigen. The AS activity is not related to 
bowel activity and does not remit with glucocorticoids or colectomy. 
It most often affects the spine and pelvis, producing symptoms of dif­
fuse low-back pain, buttock pain, and morning stiffness. The course 
is continuous and progressive, leading to permanent skeletal damage 
and deformity. Anti-TNF therapy reduces spinal inflammation and 
improves functional status and quality of life.
Sacroiliitis is symmetric, occurs equally in UC and CD, is often 
asymptomatic, does not correlate with bowel activity, and does not 
always progress to AS. Other rheumatic manifestations include hyper­
trophic osteoarthropathy, pelvic/femoral osteomyelitis, and relapsing 
polychondritis.
■
■OCULAR
The incidence of ocular complications in IBD patients is 1–10%. The 
most common are conjunctivitis, anterior uveitis/iritis, and episcleritis. 
Uveitis is associated with both UC and Crohn’s colitis, may be found 
during periods of remission, and may develop in patients following 
bowel resection. Symptoms include ocular pain, photophobia, blurred 
vision, and headache. Prompt intervention, sometimes with systemic 
glucocorticoids, is required to prevent scarring and visual impairment. 
Episcleritis is a benign disorder that presents with symptoms of mild 
ocular burning. It occurs in 3–4% of IBD patients, more commonly in 
Crohn’s colitis, and is treated with topical glucocorticoids.
■
■HEPATOBILIARY
Hepatic steatosis is detectable in about one-half of the abnormal liver 
biopsies from patients with CD and UC; patients usually present 
with hepatomegaly. Fatty liver usually results from a combination of 
chronic debilitating illness, malnutrition, and glucocorticoid therapy. 
Cholelithiasis occurs in 10–35% of CD patients with ileitis or ileal 
resection. Gallstone formation is caused by malabsorption of bile 
acids, resulting in depletion of the bile salt pool and the secretion of 
lithogenic bile.
Primary sclerosing cholangitis (PSC) is a disorder characterized by 
both intrahepatic and extrahepatic bile duct inflammation and fibro­
sis, frequently leading to biliary cirrhosis and hepatic failure; ~5% of 
patients with UC have PSC, but 50–75% of patients with PSC have IBD. 
PSC occurs less often in patients with CD. Although it can be recog­
nized after the diagnosis of IBD, PSC can be detected earlier or even 
years after proctocolectomy. Consistent with this, the immunogenetic 
basis for PSC appears to be overlapping but distinct from UC based on 
GWAS, although both IBD and PSC are commonly pANCA positive. 
Most patients have no symptoms at the time of diagnosis; when symp­
toms are present, they consist of fatigue, jaundice, abdominal pain, 
fever, anorexia, and malaise. The traditional gold standard diagnostic 
test is endoscopic retrograde cholangiopancreatography (ERCP), but 
magnetic resonance cholangiopancreatography (MRCP) is sensitive, 
specific, and safer. MRCP is reasonable as an initial diagnostic test in 

children and adults and can visualize irregularities, multifocal stric­
tures, and dilatations of all levels of the biliary tree. In patients with 
PSC, both ERCP and MRCP demonstrate multiple bile duct strictures 
alternating with relatively normal segments.

Gallbladder polyps in patients with PSC have a high incidence of 
malignancy, and cholecystectomy is recommended, even if a mass 
lesion is <1 cm in diameter. Gallbladder surveillance with ultrasound 
should be performed annually. Endoscopic stenting may be palliative 
for cholestasis secondary to bile duct obstruction. Patients with symp­
tomatic disease develop cirrhosis and liver failure over 5–10 years and 
eventually require liver transplantation. PSC patients have a 10–15% 
lifetime risk of developing cholangiocarcinoma and then cannot be 
transplanted. Patients with IBD and PSC are at increased risk of colon 
cancer and should be surveyed yearly by colonoscopy and biopsy.
In addition, cholangiography is normal in a small percentage of 
patients who have a variant of PSC known as small duct primary scle­
rosing cholangitis. This variant (sometimes referred to as “pericholan­
gitis”) is probably a form of PSC involving small-caliber bile ducts. It 
has similar biochemical and histologic features to classic PSC. It has a 
significantly better prognosis than classic PSC, although it may evolve 
into classic PSC. Granulomatous hepatitis and hepatic amyloidosis are 
much rarer EIMs of IBD.
■
■UROLOGIC
The most frequent genitourinary complications are calculi, ureteral 
obstruction, and ileal bladder fistulas. The highest frequency of neph­
rolithiasis (10–20%) occurs in patients with CD following small-bowel 
resection. Calcium oxalate stones develop secondary to hyperoxaluria, 
which results from increased absorption of dietary oxalate. Normally, 
dietary calcium combines with luminal oxalate to form insoluble cal­
cium oxalate, which is eliminated in the stool. In patients with ileal 
dysfunction, however, nonabsorbed fatty acids bind calcium and leave 
oxalate unbound. The unbound oxalate is then delivered to the colon, 
where it is readily absorbed, especially in the presence of inflammation.
CHAPTER 337
Inflammatory Bowel Disease 
■
■METABOLIC BONE DISORDERS
Low bone mass occurs in 14–42% of IBD patients. The risk is increased 
by glucocorticoids, CSA, methotrexate (MTX), and total parenteral 
nutrition (TPN). Malabsorption and inflammation mediated by IL-1, 
IL-6, TNF, and other inflammatory mediators also contribute to low 
bone density. An increased incidence of hip, spine, wrist, and rib 
fractures has been noted: 36% in CD and 45% in UC. The absolute 
risk of an osteoporotic fracture is ~1% per person per year. Fracture 
rates, particularly in the spine and hip, are highest among the elderly 
(age >60). One study noted an OR of 1.72 for vertebral fracture and an 
OR of 1.59 for hip fracture. The disease severity predicted the risk of 
a fracture. Only 13% of IBD patients who had a fracture were on any 
kind of antifracture treatment. Up to 20% of bone mass can be lost per 
year with chronic glucocorticoid use. The effect is dose-dependent. 
Budesonide may also suppress the pituitary-adrenal axis and thus car­
ries a risk of causing osteoporosis.
Osteonecrosis is characterized by death of osteocytes and adipocytes 
and eventual bone collapse. The pain is aggravated by motion and 
swelling of the joints. It affects the hips more often than knees and 
shoulders, and in one series, 4.3% of patients developed osteonecrosis 
within 6 months of starting glucocorticoids. Diagnosis is made by bone 
scan or magnetic resonance imaging (MRI), and treatment consists of 
pain control, cord decompression, osteotomy, and joint replacement.
■
■THROMBOEMBOLIC DISORDERS
Patients with IBD have an increased risk of both venous and arterial 
thrombosis even if the disease is not active. Factors responsible for 
the hypercoagulable state have included abnormalities of the plateletendothelial interaction, hyperhomocysteinemia, alterations in the 
coagulation cascade, impaired fibrinolysis, involvement of tissue 
factor–bearing microvesicles, disruption of the normal coagulation 
system by autoantibodies, and a genetic predisposition. A spectrum of 
vasculitides involving small, medium, and large vessels has also been 
observed.

■
■OTHER DISORDERS
More common cardiopulmonary manifestations include endocarditis, 
myocarditis, pleuropericarditis, and interstitial lung disease. A second­
ary or reactive amyloidosis can occur in patients with long-standing 
IBD, especially in patients with CD. Amyloid material is deposited sys­
temically and can cause diarrhea, constipation, and renal failure. The 
renal disease can be successfully treated with colchicine. Pancreatitis is 
a rare EIM of IBD and results from duodenal fistulas; ampullary CD; 
gallstones; PSC; drugs such as mercaptopurine, azathioprine, or, very 
rarely, 5-ASA agents; autoimmune pancreatitis; and primary CD of the 
pancreas.

TREATMENT
Inflammatory Bowel Disease
5-ASA AGENTS
These agents are effective at inducing and maintaining remission 
in UC. Peroxisome proliferator–activated receptor γ (PPAR-γ) may 
mediate 5-ASA therapeutic action by decreasing nuclear localiza­
tion of NF-κB. Sulfa-free aminosalicylate formulations include 
alternative azo-bonded carriers, 5-ASA dimers, and delayed-release 
and controlled-release preparations. Each has the same efficacy as 
sulfasalazine when equimolar concentrations are used.
Sulfasalazine is effective treatment for mild to moderate UC, but 
its high rate of side effects limits its use. Although sulfasalazine is 
more effective at higher doses, at 6 or 8 g/d, up to 30% of patients 
experience allergic reactions or intolerable side effects such as 
headache, anorexia, nausea, and vomiting that are attributable to 
the sulfapyridine moiety that is attached to 5-ASA. Hypersensitivity 
reactions, independent of sulfapyridine levels, include rash, fever, 
hepatitis, agranulocytosis, hypersensitivity pneumonitis, pancre­
atitis, worsening of colitis, and reversible sperm abnormalities. 
Sulfasalazine can also impair folate absorption, and patients should 
be given folic acid supplements.
PART 10
Disorders of the Gastrointestinal System
Balsalazide contains an azo bond binding mesalamine to the car­
rier molecule 4-aminobenzoyl-β-alanine; it is effective in the colon.
Delzicol and Asacol HD (high dose) are enteric-coated forms 
of mesalamine with the 5-ASA being released at pH >7. They dis­
integrate with complete breakup of the tablet occurring in many 
different parts of the gut ranging from the small intestine to the 
splenic flexure; they have increased gastric residence when taken 
with a meal. Lialda is a once-a-day formulation of mesalamine 
(Multi-Matrix System [MMX]) designed to release mesalamine 
in the colon. The MMX technology incorporates mesalamine into 
a lipophilic matrix within a hydrophilic matrix encapsulated in a 
polymer resistant to degradation at a low pH (<7) to delay release 
TABLE 337-8  Oral 5-Aminosalicylic Acid (5-ASA) Preparations
PREPARATION
FORMULATION
DELIVERY
DOSING PER DAY
Azo-Bond
Sulfasalazine (500 mg) (Azulfidine)
Sulfapyridine-5-ASA
Balsalazide (750 mg) (Colazal)
Aminobenzoyl-alanine–5-ASA
Delayed-Release
Mesalamine (400, 800 mg) (Delzicol, 
Asacol HD)
Mesalamine (1.2 g) (Lialda)
Eudragit S (pH 7)
MMX mesalamine (SPD476)
Controlled-Release
Mesalamine (250, 500, 1000 mg) 
(Pentasa)
Ethylcellulose microgranules
Stomach-colon
2–4 g (acute)
1.5–4 g (maintenance)
Delayed- and Extended-Release
Mesalamine (0.375 g) (Apriso)
Intellicor extended-release mechanism
Ileum-colon
1.5 g (maintenance)
Abbreviation: MMX, Multi-Matrix System.

throughout the colon. The safety profile appears to be comparable 
to other 5-ASA formulations.
Apriso is a formulation containing encapsulated mesalamine gran­
ules that delivers mesalamine to the terminal ileum and colon via a 
proprietary extended-release mechanism (Intellicor). The outer coat­
ing of this agent (Eudragit L) dissolves at a pH >6. In addition, there 
is a polymer matrix core that aids in sustained release throughout the 
colon. Because Lialda and Apriso are given once daily, an anticipated 
benefit is improved compliance compared with two to four daily 
doses required for other mesalamine preparations.
Pentasa is another mesalamine formulation that uses an ethylcel­
lulose coating to allow water absorption into small beads containing 
the mesalamine. Water dissolves the 5-ASA, which then diffuses out 
of the bead into the lumen. Disintegration of the capsule occurs in 
the stomach. The microspheres then disperse throughout the entire 
GI tract from the small intestine through the distal colon in both 
fasted and fed conditions.
Salofalk Granu-Stix, an unencapsulated version of mesalamine, 
has been in use in Europe for induction and maintenance of remis­
sion for several years.
Appropriate doses of the 5-ASA compounds are shown in 
Table 337-8. Some 50–75% of patients with mild to moderate 
UC improve when treated with 5-ASA doses equivalent to 2 g/d 
of mesalamine; the dose response continues up to at least 4.8 g/d.
More common side effects of the 5-ASA medications include 
headaches, nausea, hair loss, and abdominal pain. Rare side effects 
of the 5-ASA medications include renal impairment, hematuria, 
pancreatitis, and paradoxical worsening of colitis. Renal function 
tests and urinalysis should be checked yearly.
Topical Rowasa enemas are composed of mesalamine and are 
effective in mild-to-moderate distal UC. Combination therapy with 
mesalamine in both oral and enema form is more effective than 
either treatment alone for both distal and extensive UC.
Canasa suppositories composed of mesalamine are effective in 
treating proctitis.
GLUCOCORTICOIDS
The majority of patients with moderate to severe UC benefit from 
oral or parenteral glucocorticoids. Prednisone is usually started at 
doses of 40–60 mg/d for active UC that is unresponsive to 5-ASA 
therapy. Parenteral glucocorticoids may be administered as hydro­
cortisone, 300 mg/d, or methylprednisolone, 40–60 mg/d. A newer 
glucocorticoid for UC, budesonide (Uceris), is released entirely in 
the colon and has minimal to no glucocorticoid side effects. The 
dose is 9 mg/d for 8 weeks, and no taper is required. Topically 
applied glucocorticoids (hydrocortisone enemas or budesonide 
foam) are also beneficial for distal colitis and may serve as an 
adjunct in those who have rectal involvement plus more proximal 
Colon
3–6 g (acute)
2–4 g (maintenance)
6.75–9 g
Colon
Distal ileum-colon
2.4–4.8 g (acute)
1.6–4.8 g (maintenance)
2.4–4.8 g
Ileum-colon

disease. Hydrocortisone enemas are significantly absorbed from 
the rectum and can lead to adrenal suppression with prolonged 
administration. Topical 5-ASA therapy is more effective than topi­
cal steroid therapy in the treatment of distal UC.
Glucocorticoids are also effective for treatment of moderate to 
severe CD. Controlled-ileal-release budesonide has been nearly 
equal to prednisone for ileocolonic CD with fewer glucocorticoid 
side effects. Budesonide is used for 2–3 months at a dose of 9 mg/d 
and then tapered. Glucocorticoids play no role in maintenance 
therapy in either UC or CD. Once clinical remission has been 
induced, they should be tapered according to the clinical activity, 
normally at a rate of no more than 5–10 mg/week. The side effects 
are numerous, including fluid retention, abdominal striae, fat redis­
tribution, hyperglycemia, subcapsular cataracts, osteonecrosis, 
osteoporosis, myopathy, emotional disturbances, and withdrawal 
symptoms. Most of these side effects, aside from osteonecrosis, are 
related to the dose and duration of therapy.
ANTIBIOTICS
Antibiotics have no role in the treatment of active or quiescent 
UC. However, pouchitis, which occurs in ~30–50% of UC patients 
after colectomy and ileal pouch anal anastomosis (IPAA), usu­
ally responds to treatment with a variety of antibiotics including 
metronidazole and ciprofloxacin. Some patients require long-term 
treatment with antibiotics for chronic pouchitis.
AZATHIOPRINE AND MERCAPTOPURINE
Azathioprine and mercaptopurine (MP) are purine analogues used 
concomitantly with biologic therapy or, much less often, as the sole 
immunosuppressants. Azathioprine is rapidly absorbed and con­
verted to MP, which is then metabolized to the active end product, 
thioinosinic acid, an inhibitor of purine ribonucleotide synthesis 
and cell proliferation. Efficacy can be seen as early as 3–4 weeks but 
can take up to 4–6 months. Adherence can be monitored by mea­
suring the levels of 6-thioguanine and 6-methylmercaptopurine, 
end products of MP metabolism. The doses used range from 2 to 
3 mg/kg per day for azathioprine and 1 to 1.5 mg/kg per day for MP.
Although azathioprine and MP are usually safe, pancreatitis occurs 
in 3–4% of patients, typically presents within the first few weeks 
of therapy, and is completely reversible when the drug is stopped. 
Other side effects include nausea, fever, rash, and hepatitis. Bone 
marrow suppression (particularly leukopenia) is dose-related and 
often delayed, necessitating regular monitoring of the complete blood 
cell count (CBC). Additionally, 1 in 300 individuals lacks thiopurine 
methyltransferase, the enzyme responsible for drug metabolism to 
inactive end products (6-methylmercaptopurine); an additional 11% 
of the population are heterozygotes with intermediate enzyme activ­
ity. Both are at increased risk of toxicity because of increased accumu­
lation of active 6-thioguanine metabolites. Although 6-thioguanine 
and 6-methylmercaptopurine levels can be followed to determine 
correct drug dosing and reduce toxicity, weight-based dosing is an 
acceptable alternative. CBCs and liver function tests should be moni­
tored frequently regardless of dosing strategy.
One meta-analysis demonstrated a fourfold risk of lymphoma 
in IBD patients on azathioprine and MP. The highest risk for thio­
purine-associated lymphoma is in patients >65 years old actively 
using thiopurines (yearly incidence rate per 1000 patient-years of 
5.41), with a moderate risk in those between the ages of 50 and 
65 (incidence rate of 2.58 compared to an incidence rate of 0.37 in 
patients <50 years old). Patients using thiopurines also have a two- 
to threefold increased risk of nonmelanoma skin cancers.
METHOTREXATE
MTX inhibits dihydrofolate reductase, resulting in impaired DNA 
synthesis. Additional anti-inflammatory properties may be related 
to decreases in the production of IL-1. It is used most often con­
comitantly with biologic therapy to decrease antibody formation 
and improve disease response. Intramuscular (IM) or subcutane­
ous (SC) doses range from 15 to 25 mg/week. Potential toxici­
ties include leukopenia and hepatic fibrosis, necessitating periodic 

evaluation of CBCs and liver enzymes. The role of liver biopsy in 
patients on long-term MTX is uncertain but is probably limited to 
those with increased liver enzymes. Hypersensitivity pneumonitis is 
a rare but serious complication of therapy.

CYCLOSPORINE
CSA is a lipophilic peptide with inhibitory effects on both the cel­
lular and humoral immune systems. CSA blocks the production of 
IL-2 by T helper lymphocytes. CSA binds to cyclophilin, and this 
complex inhibits calcineurin, a cytoplasmic phosphatase enzyme 
involved in the activation of T cells. CSA also indirectly inhibits 
B-cell function by blocking helper T cells. CSA has a more rapid 
onset of action than MP and azathioprine.
CSA is most effective when given at 2–4 mg/kg per day IV 
in severe UC that is refractory to IV glucocorticoids, with 82% 
of patients responding. CSA can be an alternative to infliximab 
for steroid-refractory UC before colectomy. Levels as measured 
by monoclonal radioimmunoassay or by the high-performance 
liquid chromatography assay should be maintained between 150 
and 350 ng/mL.
CSA may cause significant toxicity; renal function should be 
monitored frequently. Hypertension, gingival hyperplasia, hyper­
trichosis, paresthesias, tremors, headaches, and electrolyte abnor­
malities are common side effects. Creatinine elevation calls for dose 
reduction or discontinuation. Seizures may also complicate therapy, 
especially if the patient is hypomagnesemic or if serum cholesterol 
levels are <3.1 mmol/L (<120 mg/dL). Opportunistic infections, 
most notably Pneumocystis jirovecii pneumonia, may occur with 
combination immunosuppressive treatment; antibiotic prophylaxis 
with trimethoprim-sulfamethoxazole should be given.
CHAPTER 337
TACROLIMUS
Tacrolimus is a macrolide antibiotic with immunomodulatory prop­
erties similar to CSA but 100 times as potent and not dependent on 
bile or mucosal integrity for absorption. Thus, tacrolimus has good 
oral absorption despite proximal small-bowel Crohn’s involvement. 
Tacrolimus is effective in children with refractory IBD and in adults 
with extensive involvement of the small bowel. Tacrolimus use is 
decreasing due to side effects and the expanding choice of biologic 
and small-molecule therapies.
Inflammatory Bowel Disease 
BIOLOGIC THERAPIES
Biologic therapy is now commonly given as an initial therapy for 
patients with moderate to severe CD and UC to prevent future 
complications of IBD. High-risk patients with UC who are more 
likely to require biologics include those with moderate to severe 
disease, steroid-dependent or steroid-refractory disease, and refrac­
tory pouchitis. High-risk patients with CD who are more likely to 
require biologics include those who are <30 years old, with exten­
sive disease, perianal or severe rectal disease and/or deep ulcer­
ations in the colon, and stricturing or penetrating disease behavior. 
The current goal of IBD treatment with biologics is to treat early 
in the disease course, treat aggressively with appropriate therapies, 
check drug and drug metabolite levels, administer dual therapy 
with immunomodulators and biologics in appropriate patients, 
and aim for deep remission (endoscopic and histologic remission). 
Patients who respond to biologic therapies enjoy an improvement 
in clinical symptoms; a better quality of life; less disability, fatigue, 
and depression; and fewer surgeries and hospitalizations.
Anti-TNF Therapies  TNF is a proinflammatory cytokine that 
regulates immune cells to coordinate a systemic immune response. 
Dysregulation of TNF production has been associated with 
immune-mediated disorders including IBD, and inhibition of 
TNF signaling is used in the treatment of IBD. Four TNF inhibi­
tors are currently approved for the treatment of IBD: infliximab, 
adalimumab, certolizumab pegol, and golimumab. Infliximab, 
a chimeric IgG1 antibody against TNF-α, was the first biologic 
therapy approved for moderately to severely active inflammatory 
and fistulizing CD and UC.

Randomized trials support combination therapy with infliximab 
and azathioprine for moderate to severe CD and UC. For moder­
ate to severe CD, combination therapy has been shown to be more 
effective than either infliximab or azathioprine alone. Similarly, 
combination therapy has been shown to be more effective for mod­
erate to severe UC than either infliximab or azathioprine alone.

Hospitalized patients with acute severe glucocorticoid-refractory 
UC have a high inflammatory burden and may develop a proteinlosing enteropathy, leading to an accelerated consumption, exces­
sive fecal wasting, and low serum concentrations of infliximab. 
Given a clear exposure–response relationship for infliximab in 
patients with IBD, intensive infliximab dosing regimens have been 
used in these patients.
Adalimumab (ADA) is a recombinant human monoclonal IgG1 
antibody containing only human peptide sequences and is injected 
subcutaneously. ADA binds TNF and neutralizes its function by 
blocking the interaction between TNF and its cell-surface receptor. 
Therefore, it seems to have a similar mechanism of action to inflix­
imab but with less immunogenicity. ADA is approved for treatment 
of moderate to severe CD and UC. For CD and UC, results with ADA 
are better in patients who are naïve to anti-TNF than in patients who 
have previously been treated with infliximab. In clinical practice, the 
remission rate in both CD and UC patients taking ADA increases 
with a dose increase to 40 mg weekly instead of every other week.
Certolizumab pegol is a pegylated form of an anti-TNF Fab 
portion of an antibody administered SC once monthly. SC cer­
tolizumab pegol is effective for induction of clinical response in 
patients with active inflammatory CD.
Golimumab is another fully human IgG1 antibody against TNF-α 
and is currently approved for the treatment of moderately to severely 
active UC. Like ADA and certolizumab, golimumab is injected SC.
PART 10
Disorders of the Gastrointestinal System
Side Effects of Anti-TNF Therapies   
Development of Antibodies and Drug Levels 
The develop­
ment of antibodies to infliximab is associated with an increased risk 
of infusion reactions and a decreased response to treatment. Cur­
rent practice does not include giving on-demand or episodic infu­
sions in contrast to scheduled periodic infusions because patients 
are most likely to develop antibodies. Anti-infliximab antibodies 
are generally present when the quality of response or the response 
duration to infliximab infusion decreases. Commercial assays can 
detect both infliximab and ADA antibodies and measure trough 
levels to determine optimal dosing. If a patient has high antiinfliximab antibodies and a low trough level of infliximab, it is best 
to switch to another anti-TNF therapy. If a patient has a therapeutic 
anti-TNF level and active inflammatory symptoms, the drug should 
be switched to a different class of biologic. Most acute infusion reac­
tions and serum sickness can be managed with glucocorticoids and 
antihistamines. Some reactions can be serious and would neces­
sitate a change in therapy, especially if a patient has anti-infliximab 
antibodies. It is now common practice to add an immunomodula­
tor such as azathioprine, MP, or MTX to anti-TNF therapy to help 
prevent antibody formation. 
Non-Hodgkin’s Lymphoma (NHL) 
The baseline risk of NHL in 
CD patients is 2 in 10,000, slightly higher than in the general popu­
lation. Azathioprine and/or MP therapy increases the risk to ~4 in 
10,000. It is difficult to assess whether anti-TNF medications are 
associated with lymphoma because many patients are also receiving 
thiopurines. After adjustment for co-treatments, no excess risk of 
lymphoma was found in a Danish study of a cohort of IBD patients 
exposed to anti-TNF medications. 
Hepatosplenic T-Cell Lymphoma (HSTCL) 
HSTCL is a nearly 
universally fatal lymphoma in patients with or without CD. In 
patients with CD, a total of 37 unique cases have been reported. 
Eighty-six percent of the patients were male, and the median age 
was 26 years. Patients had CD for a mean of 10 years before the 
diagnosis of HSTCL. Thirty-six patients had used either MP or 
azathioprine, and 28 patients had used infliximab. 

Skin Lesions 
New-onset psoriasiform skin lesions develop in 
nearly 5% of IBD patients treated with anti-TNF therapy. Most 
often, these can be treated topically, and occasionally, anti-TNF 
therapy must be decreased, switched, or stopped. Patients with IBD 
may have a slight, unexplained, intrinsic higher risk of developing 
melanoma. The risk of melanoma is increased almost twofold with 
anti-TNF and not thiopurine use. The risk of nonmelanoma skin 
cancer is increased with thiopurines and biologics, especially with 
≥1 year of follow-up. Patients on these medications should have a 
skin check at least once a year. 
Infections 
All of the anti-TNF drugs are associated with an 
increased risk of infections, particularly reactivation of latent tuber­
culosis and opportunistic fungal infections including disseminated 
histoplasmosis and coccidioidomycosis. Patients should have a 
purified protein derivative (PPD) or a QuantiFERON-TB Gold test 
before initiation of anti-TNF therapy. Patients >65 years old have 
a higher rate of infections and death on infliximab or ADA than 
those <65 years old. 
Other 
Acute liver injury due to reactivation of hepatitis B virus 
and to autoimmune effects and cholestasis has been reported. 
Rarely, infliximab and the other anti-TNF drugs have been associ­
ated with optic neuritis, seizures, new onset or exacerbation of clini­
cal symptoms, and radiographic evidence of central nervous system 
demyelinating disorders, including multiple sclerosis. They may 
exacerbate symptoms in patients with New York Heart Association 
functional class III/IV heart failure.
ANTI-INTEGRINS
Integrins are expressed on the cell surface of leukocytes and serve as 
mediators of leukocyte adhesion to vascular endothelium and entry 
into the intestines. α4-Integrin along with its β1 or β7 subunit inter­
act with endothelial ligands termed adhesion molecules. Interaction 
between α4β7 and mucosal addressin cellular adhesion molecule 
(MAdCAM-1) is important in lymphocyte trafficking to gut mucosa.
Natalizumab is a recombinant humanized IgG4 antibody against 
α4-integrin and is effective in induction and maintenance of patients 
with CD. However, natalizumab is no longer used for CD due to the 
risk of progressive multifocal leukoencephalopathy (PML) and the 
development of alternative biologic and small-molecule therapies.
Vedolizumab (VDZ), another leukocyte trafficking inhibitor, is 
a monoclonal antibody directed against α4β7-integrin specifically 
and has the ability to convey gut-selective immunosuppression. 
Unlike natalizumab, it inhibits adhesion of a discrete gut-homing 
subset of T lymphocytes to MAdCAM-1, but not to vascular adhe­
sion molecule 1. VDZ decreases GI inflammation without inhibit­
ing systemic immune responses or affecting T-cell trafficking to 
the central nervous system. It may be prescribed as a first-line 
biologic or after failure of a TNF antagonist in patients with CD or 
UC. Vedolizumab is more effective than adalimumab for first-line 
biologic therapy in moderate to severe UC.
Ustekinumab, a fully human IgG1 monoclonal antibody, blocks 
the biologic activity of IL-12 and IL-23 through their common p40 
subunit by inhibiting the interaction of these cytokines with their 
receptors on T cells, natural killer cells, and antigen-presenting 
cells. It is as equally effective as adalimumab for first-line biologic 
therapy for moderate to severe CD and is another option for treat­
ment of moderate to severe UC. It is particularly appealing for use 
in patients with concomitant psoriatic arthritis.
Risankizumab is a monoclonal antibody that selectively binds 
to the IL-23 p19 subunit, inhibiting its interaction with the IL-23R 
complex It is the first selective IL-23 inhibitor approved for moder­
ate to severe CD and provides an additional therapeutic option for 
patients, particularly those who have been previously treated with 
other advanced IBD therapies.
SMALL MOLECULES
Small molecules (drugs with molecular weight <1 kDa) are a new 
class of orally administered medications developed for IBD that lack 
the immunogenicity associated with monoclonal antibodies. The

advantage of small molecules is their ability to diffuse through cell 
membranes into the intracellular space and inhibit cytokine signaling 
pathways. This mechanism of action may be more efficacious com­
pared to monoclonal antibodies that inhibit specific targets because 
several cytokine pathways are involved in IBD pathogenesis and 
inhibiting numerous cytokines may be synergistic. A key regulatory 
pathway of many cytokines associated with IBD is the JAK/STAT 
pathway that activates transcription and translation of proteins that 
mediate the immune response. Janus kinase (JAK) is a family of intra­
cellular, nonreceptor tyrosine kinases that regulate cytokine signal­
ing via the JAK/STAT pathway, ultimately suppressing the immune 
response and inflammation. The JAK family members include JAK1, 
JAK2, JAK3, and tyrosine kinase 2 (TYK2).
Tofacitinib is a reversible and competitive JAK inhibitor used for 
the treatment of moderate to severe UC refractory to conventional 
therapy. It competes with ATP to bind to the ATP-docking site of the 
kinase domain of JAK. By competing with ATP, tofacitinib inhibits 
phosphorylation and activation of JAK, leading to downstream 
reduction of cytokine production and alteration of the immune 
response. Although tofacitinib is a pan-JAK inhibitor, it has higher 
specificity for JAK1 and JAK3 than for JAK2 and TYK2. The panJAK inhibition is concerning for adverse events and overall safety.
Upadacitinib is an oral, selective, and reversible JAK inhibitor 
that is approved for both UC and CD. It potently inhibits JAK1 and 
is less potent against the other isoforms, JAK2, JAK3, and TYK2. 
Upadacitinib demonstrates rapid clinical and endoscopic improve­
ment at the end of induction, which is sustained to the end of main­
tenance, with a positive benefit/risk profile.
The FDA review concluded that there is an increased risk of 
serious adverse events including heart attack, stroke, cancer, blood 
clots, and death in patients who are prescribed JAK inhibitors. 
Patients who are at risk for cardiovascular disease, have a history of 
blood clots, are current or past smokers, and/or are over the age of 
50 should consider alternative therapies. The risk of herpes zoster is 
higher with JAK inhibitors, and patients should receive the shingles 
vaccine (Shingrix). Tofacitinib and upadacitinib are FDA approved 
for use as second-line agents after failure of anti-TNF therapy.
Ozanimod is a potent sphingosine-1-phosphate (S1P1) receptor 
modulator that binds selectively with high affinity to the S1P recep­
tor subtypes S1P1 and S1P5, both of which are involved in immune 
regulation. By preventing trafficking of disease-exacerbating lym­
phocytes from the lymph nodes to the gut, ozanimod may provide 
immunomodulatory effects and moderate disease processes.
Ozanimod is approved for the treatment of moderate to severe 
ulcerative colitis. It is administered as a daily capsule.
The biologic and small-molecule therapies used in daily practice 
are detailed in Table 337-9.
NUTRITIONAL THERAPIES
Diet has long been thought to contribute to the pathogenesis of IBD 
and may also be an avenue for managing disease activity. Diet plays 
a significant role in shaping the gut microbiome, and dietary com­
ponents may interact with the microbiome and stimulate a mucosal 
immune response. In fact, active CD responds to exclusive enteral 
nutrition (EEN) or bowel rest with TPN, interventions as effective 
as glucocorticoids in inducing remission but not as effective for 
maintenance therapy. In contrast to CD, active UC is not effectively 
treated by elemental diets or TPN.
Dietary approaches to maintenance therapy in CD have largely 
been adapted from epidemiologic studies; however, significant 
heterogeneity is noted among research study outcomes. In general, 
low fiber, refined carbohydrates (especially sweetened beverages), 
animal fats, red meat, and processed meat have been associated with 
onset of IBD. Therefore, the overall dietary approach is to maximize 
fiber intake, particularly from fruits and vegetables, and to limit 
consumption of higher-risk foods. Several defined diets adhere 
to these principles with some variation, including the Mediterra­
nean diet pattern, specific carbohydrate diet, semi-vegetarian diet, 
and IBD anti-inflammatory diet (IBD-AID). However, it remains 

unclear whether diet studies will eventually lead to evidence-based 
nutrition guidelines.

Standard medical management of UC and CD is shown in 
Fig. 337-12.
SURGICAL THERAPY
Ulcerative Colitis  Nearly one-half of patients with extensive 
chronic UC undergo surgery within the first 10 years of their illness. 
The indications for surgery are listed in Table 337-10. Morbidity is 
~20% for elective, 30% for urgent, and 40% for emergency procto­
colectomy. The risks are primarily hemorrhage, contamination and 
sepsis, and neural injury. The operation of choice is an IPAA.
Because UC is a mucosal disease, the rectal mucosa can be dis­
sected and removed down to the dentate line of the anus or ~2 cm 
proximal to this landmark. The ileum is fashioned into a pouch 
that serves as a neorectum. This ileal pouch is then sutured cir­
cumferentially to the anus in an end-to-end fashion. If performed 
carefully, this operation preserves the anal sphincter and maintains 
continence. The overall operative morbidity is 10%, with the major 
complication being bowel obstruction. Pouch failure necessitating 
conversion to permanent ileostomy occurs in 5–10% of patients. 
Some inflamed rectal mucosa is usually left behind, and thus, 
endoscopic surveillance is necessary. Primary dysplasia of the ileal 
mucosa of the pouch has occurred rarely.
Patients with IPAA usually have ~6–10 bowel movements a 
day. On validated quality-of-life indices, they report better per­
formance in sports and sexual activities than ileostomy patients. 
The most frequent complication of IPAA is pouchitis in ~30–50% 
of patients with UC. This syndrome consists of increased stool 
frequency, watery stools, cramping, urgency, nocturnal leakage of 
stool, arthralgias, malaise, and fever. Pouch biopsies may distin­
guish true pouchitis from underlying CD. Although pouchitis usu­
ally responds to antibiotics, 3–5% of patients remain refractory and 
may require chronic antibiotic therapy, biologics, or even pouch 
removal.
CHAPTER 337
Inflammatory Bowel Disease 
Crohn’s Disease  The majority of patients with CD will require 
at least one operation in their lifetime. The need for surgery is 
related to duration of disease and the site of involvement. Patients 
with small-bowel disease have an 80% chance of requiring surgery. 
Those with colitis alone have a 50% chance. Surgery is an option 
only when medical treatment has failed or complications dictate its 
necessity. The indications for surgery are shown in Table 337-10. 
Small-Intestinal Disease 
Because CD is chronic and recur­
rent, with no clear surgical cure, as little intestine as possible is 
resected. Current surgical alternatives for treatment of obstructing 
CD include resection of the diseased segment and strictureplasty. 
Surgical resection of the diseased segment is the most frequently 
performed operation, and in most cases, primary anastomosis can 
be done to restore continuity. An end-to-end anastomosis may 
provide the best opportunity for an optimal functional outcome, 
compared to an antiperistaltic side-to-side anastomosis, which cre­
ates a functional block to motility leading to distention and pain 
at the anastomotic site in a subgroup of patients. If much of the 
small bowel has already been resected and the strictures are short, 
with intervening areas of normal mucosa, strictureplasties should 
be done to avoid a functionally insufficient length of bowel. The 
strictured area of intestine is incised longitudinally and the incision 
sutured transversely, thus widening the narrowed area. Complica­
tions of strictureplasty include prolonged ileus, hemorrhage, fistula, 
abscess, leak, and restricture.
Risk factors for early recurrence of disease include cigarette 
smoking, penetrating disease (internal fistulas, abscesses, or other 
evidence of penetration through the wall of the bowel), early recur­
rence since a previous surgery, multiple surgeries, and a young age 
at the time of the first surgery. Aggressive postoperative treatment 
with biologics should be considered for this group of patients. It is 
also recommended to evaluate for endoscopic recurrence of CD via 
a colonoscopy, if possible, 3–6 months after surgery.

TABLE 337-9  Biologic and Small-Molecule Agents in the Treatment of Inflammatory Bowel Disease
MEDICATION
DOSAGE
INDICATION
SERIOUS TOXICITIES
Infliximab
5 mg/kg at 0, 2, and 
6 weeks, then every 
8 weeks; may increase 
dose to 10 mg/kg every 
4 weeks depending on 
trough levels
Intensive dosing 
for hospitalized 
corticosteroidrefractory patients
Moderate to severe 
Crohn’s disease and 
ulcerative colitis
Fistulizing Crohn’s 
disease
Increased risk of infections (bacterial 
and fungal), tuberculosis (TB) 
reactivation, hepatitis B reactivation, 
lymphoma (controversial), psoriasis, 
melanoma and nonmelanoma skin 
cancers, drug-induced lupus
Contraindicated in multiple sclerosis, 
class III/IV congestive heart failure
Adalimumab
160 mg day 0, 80 mg 
day 14 and then 40 mg 
every 14 days; may 
increase to 40 mg 
every 7 days depending 
on trough levels
Moderate to severe 
Crohn’s disease and 
ulcerative colitis
Fistulizing Crohn’s 
disease
As above
Injection site 
reactions (better 
with citrate-free 
preparation)
Certolizumab
400 mg on days 0 and 
14, then 400 mg every 
28 days
Moderate to severe 
Crohn’s disease
As above
As above
As above
Golimumab
200 mg on day 0, 100 
mg on day 14, then 100 
mg every 28 days
Moderate to severe 
ulcerative colitis
As above
As above
As above
Vedolizumab
300 mg at 0, 2, and 
6 weeks, then every 
8 weeks; may increase 
dose to 300 mg every 
4 weeks
Moderate to severe 
ulcerative colitis 
(more effective than 
adalimumab as firstline therapy in one 
study) Moderate 
to severe Crohn’s 
disease.
No increased risk of serious systemic 
or opportunistic infections
No increased risk of malignancy
PART 10
Disorders of the Gastrointestinal System
Ustekinumab
6 mg/kg IV, then 90 mg 
every 8 weeks; may 
increase dose to 90 mg 
every 4 weeks
Moderate to severe 
Crohn’s disease and 
ulcerative colitis
Reversible posterior 
leukoencephalopathy syndrome 
(presents with headaches, seizures, 
confusion, and visual disturbances), 
anaphylaxis, and angioedema
Risankizumab
600 mg IV every 4 
weeks × 3 doses then 
180 mg or 360 mg SC 
every 8 weeks
Moderate to severe 
Crohn’s disease
Reversible posterior 
leukoencephalopathy syndrome 
(presents with headaches, seizures, 
confusion, and visual disturbances), 
anaphylaxis, and angioedema
Tofacitinib
10 mg bid; can 
decrease to 5 mg 
bid when patient in 
remission
Moderate to severe 
ulcerative colitis
Increased risk of heart attack, 
stroke, cancer, blood clots, and 
death. Patients who are at risk for 
cardiovascular disease, are current 
or past smokers, and/or are over the 
age of 50 should consider alternative 
therapies.
Increased risk of viral infections, 
including herpes zoster, and bacterial 
and invasive fungal infections
Upadacitinib
45 mg PO qd × 8 
weeks for ulcerative 
colitis; 45 mg PO qd × 
12 weeks for Crohn’s 
disease, then 15 or 30 
mg qd
Moderate to severe 
ulcerative colitis or 
Crohn’s disease
Increased risk of heart attack, 
stroke, cancer, blood clots, and 
death. Patients who are at risk for 
cardiovascular disease, are current 
or past smokers, and/or are over the 
age of 50 should consider alternative 
therapies.
Increased risk of viral infections, 
including herpes zoster, and bacterial 
and invasive fungal infections
Ozanimod
0.23 mg PO days 1–4, 
0.46 mg PO days 5–7, 
0.92 mg PO thereafter
Moderate to severe 
UC
Bradycardia, atrioventricular 
conduction delay, increased blood 
pressure, macular edema, posterior 
reversible encephalopathy syndrome

OTHER COMMON 
SIDE EFFECTS
TESTING
Infusion reactions Prior to infusion:
TB testing
Hepatitis B testing (HBsAb, HBsAg, HBcAb)
Maintenance:
Skin check yearly
Influenza, pneumococcal vaccinations
Hepatitis B vaccine if not immune
As above
Nasopharyngitis, 
headache, 
arthralgias, 
nausea
Prior to infusion:
TB testing
Hepatitis B testing (HBsAb, HBsAg, HBcAb)
Maintenance:
Influenza, pneumococcal vaccinations
Hepatitis B vaccine if not immune
Nasopharyngitis, 
upper respiratory 
tract infection, 
fatigue, headache
Prior to infusion:
TB testing
Hepatitis B testing (HBsAb, HBsAg, HBcAb)
Maintenance:
Influenza, pneumococcal vaccinations
Hepatitis B vaccine if not immune
Nasopharyngitis, 
upper respiratory 
tract infection, 
fatigue, headache
TB testing
Hepatitis B testing (HBsAb, HBsAg, HBcAb)
Maintenance:
Influenza, pneumococcal vaccinations
Hepatitis B vaccine if not immune
Elevated lipids, 
neutropenia, 
anemia, elevated 
liver enzymes
Prior to infusion:
First dose of Shingrix recommended, TB 
testing
Hepatitis B testing (HBsAb, HBsAg, HBcAb)
Maintenance:
Influenza, pneumococcal vaccinations
Hepatitis B vaccine if not immune
Elevated lipids, 
neutropenia, 
anemia, elevated 
liver enzymes
Prior to infusion:
First dose of Shingrix recommended, TB 
testing
Hepatitis B testing (HBsAb, HBsAg, HBcAb)
Maintenance:
Influenza, pneumococcal vaccinations
Hepatitis B vaccine if not immune
Infections, 
elevated liver 
enzymes
Prior to infusion:
First dose of Shingrix recommended, TB 
testing
Hepatitis B testing (HBsAb, HBsAg, HBcAb)
Maintenance:
Influenza, pneumococcal vaccinations
Hepatitis B vaccine if not immune

Tofacitinib/
upadacitinib
Biologic +/– MP/AZA/
MTX or ozanimod
Prednisone oral
(induction of remission only)
Hydrocortisone rectal
Budesonide oral and/or rectal
5-ASA oral and/or rectal
Mild to Moderate Ulcerative Colitis
Moderate to Severe Ulcerative Colitis
Prednisone oral (induction of remission only)
Total
parenteral or
exclusive enteral 
nutrition and bowel
rest
Mild to Moderate Crohn’s Disease
Upadacitinib
Biologic +/– MP/AZA/MTX
Hydrocortisone or solumedrol IV
(induction of remission only)
Prednisone oral (induction of remission only)
Moderate to Severe Crohn’s Disease
Fistulizing Crohn’s Disease
FIGURE 337-12  Medical management of inflammatory bowel disease. 5-ASA, 5-aminosalicylic acid; AZA, azathioprine; MP, mercaptopurine; MTX, methotrexate.
Colorectal Disease 
A greater percentage of patients with 
Crohn’s colitis require surgery for intractability, fulminant disease, 
and anorectal disease. Several alternatives are available, ranging 
from the use of a temporary loop ileostomy to resection of segments 
of diseased colon or even the entire colon and rectum. For patients 
with segmental involvement, segmental colon resection with pri­
mary anastomosis can be performed. In 20–25% of patients with 
extensive colitis, the rectum is spared sufficiently to consider rectal 
preservation. Most surgeons believe that an IPAA is contraindicated 
in CD due to the high incidence of pouch failure. A diverting colos­
tomy may help heal severe perianal disease or rectovaginal fistulas, 
but disease almost always recurs with reanastomosis. These patients 
often require a total proctocolectomy and ileostomy.
TABLE 337-10  Indications for Surgery
ULCERATIVE COLITIS
CROHN’S DISEASE
Intractable disease
Small Intestine
Fulminant disease
  Stricture and obstruction
Toxic megacolon
  unresponsive to medical therapy
Colonic perforation
  Massive hemorrhage
Massive colonic hemorrhage
  Refractory fistula
Extracolonic disease
  Abscess
Colonic obstruction
Colon and rectum
Colon cancer prophylaxis
  Intractable disease
Colon dysplasia or cancer
  Fulminant disease
 
  Perianal disease unresponsive to 
medical therapy
 
  Refractory fistula
 
  Colonic obstruction
 
  Cancer prophylaxis
 
  Colon dysplasia or cancer

Cyclosporine IV
Tofacitinib/upadacitinib
Biologic +/– MP/AZA/MTX
Hydrocortisone or solumedrol IV
(induction of remission only)
Upadacitinib
Prednisone oral (induction of remission only)
Biologic +/– MP/AZA/MTX
Total
parenteral
nutrition and
bowel rest
Budesonide oral
Biologic +/– MP/AZA/MTX
Abscess drainage and antibiotics
CHAPTER 337
Inflammatory Bowel Disease 
■
■IBD AND PREGNANCY
Patients with quiescent UC and CD have normal fertility rates; the 
fallopian tubes can be scarred by the inflammatory process of CD, 
especially on the right side because of the proximity of the terminal 
ileum. In addition, perirectal, perineal, and rectovaginal abscesses and 
fistulas as well as pelvic surgery can result in dyspareunia. Infertility 
in men can be caused by sulfasalazine but reverses when treatment is 
stopped. Women with an IPAA have decreased fertility due to scarring 
or occlusion of the fallopian tubes secondary to pelvic inflammation 
and adhesions, although studies have shown that fertility is improved 
with laparoscopic versus open IPAA.
Mild or quiescent UC or CD has no effect on birth outcomes. The 
courses of CD and UC during pregnancy mostly correlate with disease 
activity at the time of conception. Patients should be in remission 
for 3–6 months before conceiving. Most CD patients can deliver vagi­
nally, but cesarean delivery may be the preferred route of delivery for 
patients with anorectal and perirectal abscesses and fistulas to reduce 
the likelihood of fistulas developing or extending into the episiotomy 
scar. Unless they desire multiple children, UC patients with an IPAA 
may consider a cesarean delivery due to an increased risk of future fecal 
incontinence.
Sulfasalazine and all mesalamines are safe for use in pregnancy and 
nursing with the caveat that additional folate supplementation must be 
given with sulfasalazine. Topical 5-ASA agents are safe during pregnancy 
and nursing. Glucocorticoids are generally safe for use during pregnancy 
and are indicated for patients with moderate to severe disease activity. 
The amount of glucocorticoids received by the nursing infant is minimal. 
The safest antibiotics to use for CD in pregnancy for short periods of 
time (weeks, not months) are ampicillin and cephalosporins. Metroni­
dazole can be used in the second or third trimester. Ciprofloxacin causes 
cartilage lesions in immature animals and should be avoided because of 
the absence of data on its effects on growth and development in humans.
MP and azathioprine pose minimal or no risk during pregnancy. 
Breast milk has been shown to contain negligible levels of MP/azathio­
prine when measured in a limited number of patients.

MTX is teratogenic and should be discontinued at least 3 months 
before conception.

In a large prospective and multiple retrospective studies, no increased 
risk of stillbirths, miscarriages, or spontaneous abortions was seen with 
infliximab, ADA, certolizumab, vedolizumab, or ustekinumab. These 
biologics, with the exception of certolizumab, are IgG1 antibodies and 
are actively transported across the placenta in the late second and third 
trimesters. Infants can have serum levels of infliximab, ADA, vedoli­
zumab, and ustekinumab well into the first year of life, and live vac­
cines should be avoided until 12 months of age. Certolizumab crosses 
the placenta by passive diffusion, and infant serum and cord blood 
levels are minimal. The biologics are safe in nursing. Miniscule levels 
of infliximab, ADA, certolizumab, vedolizumab, and ustekinumab 
have been reported in breast milk. These levels are of no clinical sig­
nificance. It is recommended that drugs should not be switched during 
pregnancy unless necessitated by the medical condition of the IBD. 
Tofacitinib and upadacitinib should not be used during pregnancy. 
Animal studies show teratogenic effects with both of these drugs, and 
data in humans are limited. A washout period of at least 4 weeks is 
recommended before conception. Surgery in UC should be performed 
only for emergency indications, including severe hemorrhage, perfora­
tion, and megacolon refractory to medical therapy. Total colectomy 
and ileostomy carry a 50% risk of postoperative spontaneous abortion. 
The best time to perform surgery is in the second trimester if necessary. 
Patients with IPAAs have increased nighttime stool frequency during 
pregnancy that resolves postpartum. Transient small-bowel obstruc­
tion or ileus has been noted in up to 8% of patients with ileostomies.
CANCER IN IBD
PART 10
Disorders of the Gastrointestinal System
■
■ULCERATIVE COLITIS
Patients with long-standing UC are at increased risk for developing 
colonic epithelial dysplasia and carcinoma (Fig. 337-13).
The risk of neoplasia in chronic UC increases with duration and 
extent of disease. In contrast to the relatively high risk in one large 
meta-analysis (2% after 10 years, 8% after 20 years, and 18% after 30 years 
of disease), a decrease in the risk of colorectal cancer has been noted 
over time potentially due to better control of inflammation and better 
colonoscopic surveillance. The rates of colon cancer are still about 
1.5–2 times higher than in the general population, and colonoscopic 
surveillance is the standard of care.
Annual or biennial colonoscopy with multiple biopsies is recom­
mended for patients with >8–10 years of extensive colitis (greater 
than one-third of the colon involved) or 12–15 years of proctosig­
moiditis (less than one-third but more than just the rectum) and has 
been widely used to screen and survey for subsequent dysplasia and 
carcinoma. International guideline societies have recommended chro­
moendoscopy for dysplasia surveillance in IBD. Chromoendoscopy 
enhances the visualization of the surface and pit pattern of the mucosa, 
FIGURE 337-13  Medium-power view of low-grade dysplasia in a patient 
with chronic ulcerative colitis. Low-grade dysplastic crypts are interspersed 
among regenerating crypts. (Courtesy of Dr. R. Odze, Division of Gastrointestinal 
Pathology, Department of Pathology, Brigham and Women’s Hospital, Boston, 
Massachusetts; with permission.)

as well as borders of lesions, in order to better define areas of dysplasia 
compared to standard-definition white light endoscopy. In real-life 
settings, the practice has been to use standard-definition white light 
endoscopy with surveillance biopsies in patients with chronic colitis at 
average risk and chromoendoscopy in higher-risk patients including 
those with a history of dysplasia, PSC, or family history of colorectal 
cancer.
Risk factors for cancer in UC include long-duration disease, exten­
sive disease, family history of colon cancer, PSC, a colon stricture, and 
the presence of postinflammatory pseudopolyps on colonoscopy.
■
■CROHN’S DISEASE
Risk factors for developing cancer in Crohn’s colitis are long-duration 
and extensive disease, bypassed colon segments, colon strictures, PSC, 
and family history of colon cancer. The cancer risks in CD and UC are 
probably equivalent for similar extent and duration of disease. In the 
CESAME study, a prospective observational cohort of IBD patients 
in France, the standardized incidence ratios of colorectal cancer were 
2.2 for all IBD patients (95% CI, 1.5–3.0; p < .001) and 7.0 for patients 
with long-standing extensive colitis (both Crohn’s and UC) (95% CI, 
4.4–10.5; p < .001). Thus, the same endoscopic surveillance strategy 
used for UC is recommended for patients with chronic Crohn’s colitis. 
A pediatric colonoscope can be used to pass narrow strictures in CD 
patients, but surgery should be considered in symptomatic patients 
with impassable strictures.
■
■MANAGEMENT OF DYSPLASIA AND CANCER
Dysplasia can be flat or polypoid. If flat high-grade dysplasia is 
encountered on colonoscopic surveillance, the usual treatment is 
colectomy for UC and either colectomy or segmental resection for 
CD. If flat low-grade dysplasia is found (Fig. 337-13), most inves­
tigators recommend immediate colectomy. Adenomas may occur 
coincidently in UC and CD patients with chronic colitis and can be 
removed endoscopically provided that biopsies of the surrounding 
mucosa are free of dysplasia.
IBD patients are also at greater risk for other malignancies. Patients 
with CD may have an increased risk of NHL, leukemia, and myelodys­
plastic syndromes. Severe, chronic, complicated perianal disease in CD 
patients may be associated with an increased risk of cancer in the lower 
rectum and anal canal (squamous cell cancers). Although the absolute 
risk of small-bowel adenocarcinoma in CD is low (2.2% at 25 years in 
one study), patients with long-standing, extensive, small-bowel disease 
should be considered for screening.
COVID-19 AND IBD
COVID-19, caused by SARS-CoV-2, was first reported in December 
2019 and has rapidly spread throughout the world, leading to an inter­
national pandemic. Glucocorticoids, immunomodulators (thiopurines, 
MTX), biologics, and JAK inhibitors, commonly used to treat IBD, 
are associated with higher rates of serious viral and bacterial infec­
tions, and patients with IBD using these medications are potentially 
at increased risk of a serious COVID-19 infection. Yet, it is also pos­
sible that some forms of immune suppression may blunt the excessive 
immune response/cytokine storm characteristic of severe COVID-19 
infection and consequently reduce mortality. Using data from the Sur­
veillance Epidemiology of Coronavirus Under Research Exclusion for 
Inflammatory Bowel Disease, it was found that increasing age (adjusted 
OR 1.04; 95% CI, 1.01–1.02), two or more comorbidities (adjusted 
OR 2.9; 95% CI, 1.1–7.8), and systemic glucocorticoids (adjusted OR 
6.9; 95% CI, 2.3–20.5) are associated with severe COVID-19 in IBD 
patients. Anti-TNF treatment was not associated with severe COVID-19 
(adjusted OR 0.9; 95% CI, 0.4–2.2).
■
■FURTHER READING 
Barberio B et al: Efficacy of biological therapies and small molecules 
in induction and maintenance of remission in luminal Crohn’s dis­
ease: Systematic review and network meta-analysis. Gut 72:264, 2023.
Chang JT: Pathophysiology of inflammatory bowel disease. N Eng J 
Med 383:2652, 2020.