# 07 - 33_Neurochemistry

# 01 - 1. Synaptic transmission

# 1. Synaptic transmission

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1. Synaptic transmission 
 The 
presynaptic 
neuron 
synthesises, 
transports 
and 
stores 
the 
chemical 
messenger 
(neurotransmitter). Synthesis takes place in cell body / soma which contains the essential protein 
synthesis machinery. From here axonal transport occurs, and the neurotransmitter reaches the 
synaptic terminal. Before its eventual release, the neurotransmitter is stored within the synaptic 
vesicle. The release takes place through the process of membrane fusion and exocytosis. 
 Upon release, the neurotransmitter occupies receptors present on the surface of the postsynaptic 
neuronal membrane. Some of the neurotransmitter molecules will also act on autoreceptors that 
are present in the presynaptic neuronal membrane. Such autoreceptor activity is considered to be 
crucuial for feedback inhibition of the neurotransmitter synthesis and release. 
 Neurotransmitters exhibit specificity in receptor interaction. One neurotransmitter can have more 
than one receptor types, but within a given receptor site only a particular chemical conformation 
can be accommodated (lock and key). 
 Receptors have a finite number and thus get saturated if there is an over secretion of 
neurotransmitter. 
 Receptor binding is often competitive; relative synaptic concentrations of competing molecules 
decide the eventual degree of receptor activity. Most receptors are bound reversibly i.e. following 
dissociation of the neurotransmitter; the receptor falls back to its physiological status quo. Some 
molecules can act irreversibly producing structural alterations in the protein of receptor 
complexes. 
 After synaptic release and activity, cessation of neurotransmitter action takes place via 
1. Reuptake back to presynaptic neuron via special transporters (e.g. monoamine transporters) 
2. Enzymatic breakdown at the cleft (e.g. via COMT/MAO-A enzyme) 
3. Removed by glia or plasma circulation (e.g. glutamate shuttle) 
 
 Feedback control of a neurotransmitter may exist at various points 
1. Control of presynaptic synthesis 
2. Regulation of release 
3. Reuptake regulation 
4. Autoreceptor mediated presynaptic inhibition 
5. Independent postsynaptic inhibition via a different neuronal network 
Neurotransmitters 
 
 
Monoamines 
Amino acids 
Peptides 
Dopamine 
Norepinephrine 
Epinephrine 
Serotonin 
Acetylcholine 
Histamine 
GABA 
Glycine 
Glutamate 
 
Endorphins 
Cholecystokinin 
Neurotensin 
Neuropeptide Y 
Leptin 
Ghrelin

# 02 - 2. Classification of receptors

# 2. Classification of receptors

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2. Classification of receptors 
Receptors may be categorized into three categories: 
 
(1) Ligand-gated channels (ionotropic), in which binding of a chemical messenger alters the 
 
probability of opening of transmembrane pores or channels; 
 
(2) Those in which the receptor proteins are coupled to intracellular G proteins as transducing 
 
elements (metabotropic); 
 
(3) Those termed ligand-dependent regulators of nuclear transcription (nuclear receptors). 
 Ionotropic or ion channel receptors result in fast response (GABAA benzodiazepine); G protein coupling 
(metabotropic) is comparatively a slower process (most antipsychotics, antidepressants). 
Ion channel receptors are made up of four or five protein subunits making up a pore like structure. The 
GABA-A receptor's structure is typical of most ligand-gated (ionotropic) receptors [‘doughnut with a hole 
in the centre’ or ‘rosette’ shaped]. Each protein subunit is a string of amino acids which passes in and out 
of the cell membrane four times. At the extracellular end of this string is a large N-terminal; this end-chain 
is thought to mediate GABA-channel interactions. In the middle of the string is a large intracellular loop of 
amino acids with four sites where phosphorylation occurs. 
Inhibitory neurotransmitter action leads to the entry of Cl- while excitatory action results in the entry of 
Ca2+ or other cations. Ionotropic receptors include GABAA, NMDA, the 5HT3 subtype of serotonin 
receptors. 
G-protein-coupled metabotropic receptors are proteins that span the cell membrane seven times 
(serpentine receptors). G protein-coupled receptors act via cyclase mediated second messenger activation 
(GTP, ATP, etc.). Gs-proteins are stimulatory; Gi-proteins inhibit the adenylate cyclase. A third variant of 
G-protein receptors acts via phospholipase C. Metabotropic receptors influence protein synthesis 
eventually thus producing longer lasting effects. Metabotropic receptors include DA receptors, most 5HT 
receptors except 5HT-3, NEN and neuropeptides including opioid receptors are G coupled. 
Nuclear receptors such as glucocorticoid receptors are part of a superfamily of receptors that have a 
cysteine-rich DNA-binding domain, a ligand-binding domain, and a variable amino terminal region. 
Upon appropriate ligand binding, a nuclear receptor becomes a transcription factor and binds in turn to 
DNA via zinc fingers. Other nuclear receptors include the receptors for progesterone, androgen, and 1,25dihydroxycholecalciferol (Vitamin D). Many receptors of this family are orphan receptors, for which the 
ligands are still unidentified. 
The glucocorticoid receptor is located mainly in the cytoplasm but migrates to the nucleus as soon as it 
binds its ligand. In contrast, the estrogen and the triiodothyronine (T3) receptors are retained in the 
nucleus and bind hormones directly in the nucleus itself.

# 03 - 3. Dopamine

# 3. Dopamine

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3. Dopamine 
 
 
•tyrosine l-dopa  dopamine 
Source 
Source 
•tyrosine hydroxylase 
Rate limiting step 
Rate limiting step 
•Monoamine oxidase (MAO) & Catechol-o-methyl transferase (COMT). 
•MAO-A more selectively metabolizes norepinephrine and serotonin 
•MAO-B more selectively metabolizes dopamine. 
Breakdown enzymes 
Breakdown enzymes 
•Homovanillic acid 
Breakdown product 
Breakdown product 
•Dopamine transporter (cocaine inhibits this transported) 
Reuptake 
Reuptake 
•Motivation, novelty seeking, reward circuitry (addictions), arousal and motor 
movement gating in basal ganglia 
Function 
Function 
•5 types; D1 to D5 . All are G protein coupled 
•D1-like  D1 
 & D 5; increase adenylate cyclase (stimulatory). D1 exclusively 
postsynaptic; resistant to antagonism. D5 more limbic in distribution; 10 times 
higher dopamine affinity 
•D2-like  D2,3 & 4 ; decrease adenylate cyclase (inhibitory). D4 is found primarily in 
the frontal cortex and clozapine has a high affinity. D4-selective antagonists do not 
have antipsychotic efficacy. 
Receptors 
Receptors 
•Levels low in Parkinson’s; high in psychosis especially at mesolimbic area; may be 
low in anhedonia and negative symptoms in mesocortical area. 
Disorders 
Disorders

# 04 - 4. Noradrenaline

# 4. Noradrenaline

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4. Noradrenaline 
 
 
•tyrosine l-dopa dopamine  norepinephrine  epinephrine 
Source 
Source 
•tyrosine hydroxylase 
Rate limiting step 
Rate limiting step 
•dopamine-b-hydroxylase modulates norepinephrine production; 
phenylethanolamine-N-methyltransferase modulates conversion of NEN to 
epinephrine. 
Synthetic enzymes 
Synthetic enzymes 
•Monoamine oxidase (MAO – A especially) & Catechol-o-methyl transferase (COMT). 
Breakdown enzymes 
Breakdown enzymes 
•3-methoxy-4-hydroxyphenylglycol (MHPG) & VMA – vanillyl mandelic acid. 
•MHPG is the major metabolite in CNS while VMA is major metabolite from 
peripheral nervous system/endocrine system. 
Breakdown product 
Breakdown product 
•noradrenaline reuptake channel (tricyclics, reboxetine inhibit this) 
Reuptake 
Reuptake 
•arousal, anxiety, mood regulation, autonomic mediation 
Function 
Function 
•2 major types; α and β. 
•α divided into a1 and a2 
•α1 receptors phospholipase C coupled; mostly postsynaptic 
•α2 receptors Gi coupled ; mostly presynaptic autoreceptors 
•β-receptors Gs coupled; predominate locus ceruleus – may regulate a 
•β1-receptors – high affinity to norepinephrine and β2-receptors – high affinity to 
epinephrine. 
Receptors 
Receptors 
•Levels low in depression and abnormal in panic/anxiety disorders. 
Disorders 
Disorders

# 05 - 5. Serotonin

# 5. Serotonin

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5. Serotonin
 
 
•tryptophan5 hydroxy l-tryptophan  serotonin 
Source 
Source 
•availability of tryptophan (hence it is possible to conduct tryptophan depletion 
studies and manipulate 5HT system) 
Rate limiting step 
Rate limiting step 
•tryptophan hydroxylase 
Synthetic enzymes 
Synthetic enzymes 
•MAO (preferentially MAO-A) 
Breakdown enzymes 
Breakdown enzymes 
•5-hydroxyindoleacetic acid (5-HIAA) 
Breakdown product 
Breakdown product 
•Serotonin reuptake channel (tricyclics, SSRIs inhibit this) 
Reuptake 
Reuptake 
•mood, perception of pain, feeding, sleep-wake cycle, motor activity, sexual behaviour, 
and temperature regulation. 
Function 
Function 
•14 known subtypes of serotonin receptors (5-HT1A, 5-HT1B, 5-HT1D, 5-HT1E, 5-HT1F, 5HT2A, 5-HT2B, 5-HT2C, 5-HT3, 5-HT4, 5-HT5A, 5-HT5B, 5-HT6, and 5-HT7) 
•All except 5-HT3 are G-protein-coupled receptors; 5HT3 predominant in gut; 
associated with motility. 
•5-HT1A receptors – Gi coupled postsynaptic; antidepressant response; sexual 
behaviour 
•5-HT1B receptors – Gi coupled presynaptic; 
•5-HT1D receptors – Gi coupled - both presynaptic and postsynaptic. 
•5-HT2 receptors - phospholipase C coupled; postsynaptic; antagonism leads to 
antipsychotic response (atypicals) and sedation; LSD causes 5-HT2 stimulation; down 
regulation noted after antidepressant treatment / ECT. 
•5-HT6 may be involved in antidepressant action 
•5-HT7 - regulation of circadian rhythm 
Receptors 
Receptors 
•low serotonin levels  increased depression, aggression, suicide, and impulsivity; 
regulate dopamine system – role in psychosis 
Disorders 
Disorders

© SPMM Course 
Receptor 
Action 
5HT1A 
Antidepressant (agonist), anxiolytics (partial agonist) 
5HT1B 
Aggression 
5HT1D 
Antimigraine (antagonist) 
5HT2A 
Antipsychotic (antagonist); hallucinogens (agonist / partial agonist); implicated in working 
memory; also seen in platelets and smooth muscles 
5HT2B 
Stimulation may produce cardiac valvular fibrosis (dexfenfluramine) 
5HT2C 
Anxiogenic and anorexic effect (agonists) 
5HT3 
Antiemetic (antagonist) 
5HT6 
Possible antipsychotic/antidepressant action (antagonism) 
5HT7 
Regulation of circadian rhythm 
 
DOPA decarboxylase (DDC) “is an enzyme implicated in 2 metabolic pathways, synthesizing two 
important neurotransmitters, dopamine and serotonin (Christenson et al., 1972). Following the 
hydroxylation of tyrosine to form L-dihydroxyphenylalanine (L-DOPA), catalyzed by tyrosine 
hydroxylase, DDC decarboxylates L-DOPA to form dopamine. This neurotransmitter is found in different 
areas of the brain and is particularly abundant in basal ganglia. Dopamine is also produced by DDC in the 
sympathetic nervous system and is the precursor of the catecholaminergic hormones, noradrenaline and 
adrenaline in the adrenal medulla”. In the nervous system, tryptophan hydroxylase produces 5-OH 
tryptophan, which is decarboxylated by DDC, giving rise to serotonin. DDC is a homodimeric, pyridoxal 
phosphate-dependent enzyme. (Excerpt from www.omim.org)

# 06 - 6. Acetylcholine

# 6. Acetylcholine

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6. Acetylcholine 
 
•choline and acetyl-coenzyme A 
Source 
Source 
•availability of choline 
Rate limiting step 
Rate limiting step 
•choline acetyltransferase 
Synthetic enzymes 
Synthetic enzymes 
•acetylcholinesterase – rapid metabolism 
Breakdown enzymes 
Breakdown enzymes 
•Choline 
Breakdown product 
Breakdown product 
•no reuptake. Degraded choline is re up-taken and recycled. 
Reuptake 
Reuptake 
•Modulate arousal, learning, memory, rapid eye movement sleep, pain perception, and 
thirst and parasympathetic mediation. 
Function 
Function 
•Muscarinic receptors - G-protein-coupled. 
•Five subtypes (M1, M2, M3, M4, and M5) 
•Nicotinic receptors - ion channels; 
•more in peripheral parasympathetic system; 
•Less common than M receptors in CNS – mediates attention. 
Receptors 
Receptors 
•reduced cholinergic function in Alzheimer's dementia; dopamine balance affected in 
Parkinson’s 
Disorders 
Disorders

# 07 - 7. GABA

# 7. GABA

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7. GABA 
 
•Glutamic acid (glutamate) 
Source 
Source 
•glutamic acid decarboxylase (GAD) catalysis 
Rate limiting step 
Rate limiting step 
•glutamic acid decarboxylase (GAD) 
Synthetic enzymes 
Synthetic enzymes 
•GABA transaminase 
Breakdown enzymes 
Breakdown enzymes 
•Broken down to glutamate, and then eventually to succinic acid 
Breakdown product 
Breakdown product 
•reuptake into both presynaptic nerve terminals and surrounding glial cells; uptake 
system is bidirectional and both temperature- and ion-dependent process; (inhibited 
by tiagabine) 
Reuptake 
Reuptake 
•Mediates anxiety, seizure cessation, and actions of benzodiazepines, barbiturates, and 
alcohol. 
Function 
Function 
•GABAA and GABAB 
•GABAA – opens chloride channel; inhibitory – leads to hyperpolarization; made of 
five subunits and at least 14 subunit subtypes 
•GABAB receptor is G-protein-coupled; baclofen is selective agonist 
Receptors 
Receptors 
•Role in anxiety disorders and alcoholism; may have a role in many other disorders 
including epilepsy and Huntington’s. 
Disorders 
Disorders

# 08 - 8. Glutamate

# 8. Glutamate

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8. Glutamate 
 
•1. from 2-oxoglutarate and aspartate by aspartate aminotransferase, 
•2. from glutamine by glutaminase, or 
•3. from 2-oxoglutarate by ornithine aminotransferase 
Source 
Source 
•accumulation of precursors such as glutamine or by end-product inhibition 
Regulation 
Regulation 
•glutaminase 
Synthetic enzymes 
Synthetic enzymes 
•Glutamate dehydrogenase, glutamine synthetase 
Breakdown enzymes 
Breakdown enzymes 
•Broken down to glutamine or alpha-ketoglutarate 
Breakdown product 
Breakdown product 
•Largely glial uptake with conversion to glutamine 
Reuptake 
Reuptake 
•Important metabolic role – intermediary in oxidation pathway (malate shuttle), 
immediate precursor of all GABA in CNS, intermediary in ammonia cycle; NMDA - 
memory acquisition, developmental plasticity, epilepsy, and ischemic brain injury. 
NMDA receptor mediates long-term potentiation 
Function 
Function 
•metabotropic - 8 in total; 3 groups. Group I - mGluR1& mGluR5 – linked to 
phospholipase C 
•Ionotropic: NMDA and non-NMDA 
•NMDA - made up of subunits with distinct binding sites for glutamate, glycine, 
phencyclidine (PCP), magnesium, and zinc. 
•Non NMDA – kainate binding or AMPA type. 
Receptors 
Receptors 
•excitotoxic glutamate toxicity in stroke/schizophrenia/seizures suspected. NMDA 
antagonists can cause hallucinations – e.g. PCP, ketamine 
Disorders 
Disorders

# 09 - 9. Glycine

# 9. Glycine

# 10 - 10. Endocannabinoids

# 10. Endocannabinoids

# 11 - 11. Neurotrophins

# 11. Neurotrophins

© SPMM Course 
9. Glycine 
 Glycine is the primary inhibitory neurotransmitter in the spinal cord 
 It has the simplest structure of all aminoacids 
 It is synthesized primarily from serine by serine trans-hydroxymethylase and glycerate 
dehydrogenase, both of which are rate-limiting steps. 
 Glycine acts as a ‘mandatory adjunctive neurotransmitter’ for glutamate receptors; the excitatory 
glycine site on the NMDA receptor is called non-strychnine-sensitive glycine receptor. 
 Strychnine-sensitive glycine receptor is an inhibitory receptor seen in the spinal cord where glycine 
acts independently. 
 Facilitating glycine transmission can help reduce negative symptoms of schizophrenia. An 
experimental agent called bitopertin is a glycine reuptake inhibitor that has shown some early 
promise in reducing negative symptoms. 
 
10. Endocannabinoids 
 Two 
endogenous 
cannabinoid 
substances 
- 
Anandamide 
(a 
weak 
ligand) 
and 
2arachnidonylglycerol (a strong ligand) are formed from arachidonic acid and ethanolamine. 
 The two types of cannabinoid receptors, central (CB1) and peripheral (CB2), both bind 
tetrahydrocannabinol (THC), the active ingredient of marijuana. 
 Anandamide lowers intraocular pressure, decreases activity level, and relieves pain. 
 
11. Neurotrophins 
These are substances that act as polypeptide growth factors influencing proliferation and differentiation 
of neurons and glial cells. The best-characterised factors are Nerve growth factor (NGF); brain derived 
neurotrophic factor (BDNF), neurotrophin 3 and neurotrophin 4. 
According to neurotrophin hypothesis neurons compete during development for the limited resource of 
growth factors in the target region. Those neurons that are highly responsive, e.g. via high affinity 
binding sites, survive while others undergo programmed cell death. Incorrect targeting of axons may 
also lead to apoptosis (programmed cell death). 
BDNF may have a role in long-term potentiation (LTP) of memory. In animals, chronic stress leads to 
down regulation of BDNF. BDNF has been shown to have trophic effects on serotonergic and 
noradrenergic neurons. SSRIs and other antidepressants including ECT up regulate BDNF. The time 
course of this up regulation coincides with observed therapeutic actions of antidepressant interventions. 
A single nucleotide polymorphism in the BDNF gene on chromosome 11p13 results in an amino-acid 
substitution of valine (val) with methionine (met) at codon 66 (Val66Met) reducing BDNF activity. 
BDNF met/met mice demonstrate increased anxiety. Clinical studies in humans have demonstrated that 
subjects with the Val66Met allele have impaired hippocampal activation and performance. It is 
controversial if BDNF polymorphism increases the risk of clinical disorders or not.

# 12 - 12. Some clinical implications

# 12.  Some clinical implications

© SPMM Course 
12. Some clinical implications 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
β ADRENOCEPTOR 
Chronic antidepressant treatment induces a 
reduction in β adrenoreceptor density around 2 
weeks after starting antidepressants; this correlates 
with therapeutic effects. 
 
Unmedicated suicide victims show higher density 
of β adrenoreceptors. 
β blockade can reduce peripheral features of 
anxiety driven by sympathetic overdrive. 
5HT & DEPRESSION 
An increased density of 5HT2 binding sites has 
been shown in post mortem studies of depressed / 
suicidal patients. The increase in 5HT2A receptors 
is most prominent in dorsolateral prefrontal cortex 
and in platelets of medication naïve patients. A 
reduction in 5HT1A receptors has also been noted 
in cortex 
 
Long-term antidepressant treatment has been 
shown to reduce 5HT2 receptors and increase 
5HT1A function. But these changes may not be 
causative of antidepressant action as they predate 
any clinical response to antidepressant therapy 
 
Most directly acting 5HT1A agonists have poor 
antidepressant activity. 
 
Ach & LEWY BODY DEMENTIA 
Brain acetylcholine levels are reduced in DLB 
similar to Alzheimer’s. Cortical choline acetyl 
transferase (ChAT) is reduced to a greater extent 
(85%) in patients with hallucinations in Lewy 
body dementia than in those without 
hallucinations (50%). 
This may partially explain the altered sleep-wake 
patterns seen in DLB and also the response of 
hallucinations to acetylcholinesterase inhibitors 
ABERRANT SALIENCE 
Kapur proposed that in the normal individual, the 
role of mesolimbic dopamine is to attach 
significance or ‘salience’ to an external stimulus, 
or an internal thought. This converts a neutral 
piece of information into an attention grabbing one 
(Kapur, 2003). 
 
In acute psychosis where hyperdopaminergic state 
is noted in mesolimbic system, insigniﬁcant events 
and perceptions receive inappropriate salience 
leading to delusional elaborations. 
 
Antipsychotics are claimed to "dampen the 
salience" of these abnormal experiences - do not 
erase the symptoms - but provide the platform for a 
process of psychological resolution.

© SPMM Course 
Notes prepared using excerpts from: 
 
 http://omim.org/entry/107930 
 Kapur, S. Psychosis as a state of aberrant salience: a framework linking biology, phenomenology, 
and pharmacology in schizophrenia. Am J Psychiatry 2003; 160 
 Angelucci et al. BDNF in schizophrenia, depression and corresponding animal models. Molecular 
Psychiatry (2005) 10, 345–352 
 Artigas F. Serotonin receptors involved in antidepressant effects. Pharmacology & Therapeutics, 
2013; 119-31 
 
 
DISCLAIMER: This material is developed from various revision notes assembled while preparing for 
MRCPsych exams. The content is periodically updated with excerpts from various published 
sources including peer-reviewed journals, websites, patient information leaflets and books. These 
sources are cited and acknowledged wherever possible; due to the structure of this material, 
acknowledgements have not been possible for every passage/fact that is common knowledge 
in psychiatry. We do not check the accuracy of drug related information using external sources; 
no part of these notes should be used as prescribing information.